CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_BABBO (Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.364e-20
Identity = 47/122 (38.52%), Postives = 64/122 (52.46%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            NH+ +W ++ P    GGEP    +   I+  FGS  A     S   A   GSGW WL L  +    +V+T     PL  K     PLL  DVWEHAYY+ YKN +  Y+ + WN++NW +A+
Sbjct:   73 NHTFYWNSMGP--NCGGEPT-GPIRKKIEEKFGSFSAFKTDFSNLLAGHFGSGWGWLVLKDDGTADIVQTHDAGSPL--KENLGRPLLCCDVWEHAYYIDYKNDRLSYINSWWNLVNWDFAN 189          

HSP 2 Score: 38.5058 bits (88), Expect = 2.364e-20
Identity = 17/40 (42.50%), Postives = 21/40 (52.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP LPY    L P IS E +  H+ KHH  YV   N  ++
Sbjct:    5 LPALPYGMRELIPHISEETLSFHYGKHHAGYVNKLNSLIK 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM1_HALVO (Superoxide dismutase [Mn] 1 OS=Halobacterium volcanii GN=sod1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.144e-19
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+ H +FW+N++P    GG+ P   L   I   FGS EA   K   E AA   +GW  L  D+   +L  VV    +Q  L    P    +L +DVWEH+YY  Y   + D++   + V++W   +  Y++
Sbjct:   72 GHILHDLFWQNMSPE---GGDEPEGLLAERIAEDFGSYEAW--KGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSHP----ILALDVWEHSYYHDYGPARGDFVSAFFEVVDWDEPAARYEQ 194          

HSP 2 Score: 48.521 bits (114), Expect = 1.144e-19
Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 250
            L  LPY+Y ALEP IS +++  HH  HHQ YV  +N   E L
Sbjct:    6 LDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNADDETL 47          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM2_HALVO (Superoxide dismutase [Mn] 2 OS=Halobacterium volcanii GN=sod2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.145e-19
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH+ H +FW+N++P    GG+ P   L   I   FGS EA   K   E AA   +GW  L  D+   +L  VV    +Q  L    P    +L +DVWEH+YY  Y   + D++   + V++W   +  Y++
Sbjct:   71 GHILHDLFWQNMSPE---GGDEPEGLLAERIAEDFGSYEAW--KGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSHP----ILALDVWEHSYYHDYGPARGDFVSAFFEVVDWDEPAARYEQ 193          

HSP 2 Score: 48.521 bits (114), Expect = 1.145e-19
Identity = 21/42 (50.00%), Postives = 26/42 (61.90%), Query Frame = 2
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 250
            L  LPY+Y ALEP IS +++  HH  HHQ YV  +N   E L
Sbjct:    5 LDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNADDETL 46          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.518e-19
Identity = 42/122 (34.43%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  325 HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWN-VMNWK 687
            H NH+ FW+ + P   G  +    +L  A+   FGS+    +  +A GA   GSGW WL  D++    + +T    +PL      L   LG DVWEH+YY+ ++N +P YL N  + ++NW+
Sbjct:   79 HWNHAQFWEMMGP---GEDKKMPGALEKALVESFGSVAKFKEDFAAAGAGQFGSGWAWLVKDSDGALKITKTENGVNPLCFGQTAL---LGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWE 194          

HSP 2 Score: 40.0466 bits (92), Expect = 2.518e-19
Identity = 19/40 (47.50%), Postives = 25/40 (62.50%), Query Frame = 2
Query:  125 LPDLPYDYSALEP-AISGEIMQLHHQKHHQAYVTNYNKAV 241
            LP LPY + AL    +S E ++ HH  HH+AYV N NK +
Sbjct:    5 LPALPYAHDALASLGMSKETLEYHHDLHHKAYVDNGNKLI 44          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCMA (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium malmoense GN=sodA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.345e-19
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 618
            GHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + SA    LQGSGW  LG D+   +L+     +Q   V     ++PLL +D+WEHA
Sbjct:   45 GHVNHSIWWKNLSP---NGGDKPTGDLASAIDDAFGSFDKFRAQFSAAANGLQGSGWAVLGYDSLGDKLLTFQLYDQQANVPLG--IIPLLQVDMWEHA 138          

HSP 2 Score: 34.6538 bits (78), Expect = 4.345e-19
Identity = 16/32 (50.00%), Postives = 19/32 (59.38%), Query Frame = 2
Query:  191 HHQKHHQAYVTNYNKAVEQLFQALNKVDTSTV 286
            HH KHH AYV   N AV +L +A  K D S +
Sbjct:    1 HHSKHHAAYVKGVNDAVAKLEEARAKDDHSAI 32          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_ACIAM (Superoxide dismutase [Fe] OS=Acidianus ambivalens GN=sod PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  295 AGRYQVQR---------RGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            +G+Y +Q           GH  HS++W+N+AP  +GGG+P    +G  I+  +GS E      +    +L G+GW  L  + E   L + T  N          L  LL +D +EHAYYLQYKN + DY+ N WN++NW +A    Q+
Sbjct:   63 SGQYDIQGLLRGLVFNINGHKLHSLYWQNMAPAGKGGGKPG-GVIGDLIEKQYGSFEKFKALFTEAANSLPGTGWTVLYYEVENGNLQIMTFENH--FQNHIAELPILLILDEFEHAYYLQYKNKRADYVNNWWNLVNWDFADKKLQQ 207          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.573e-18
Identity = 45/125 (36.00%), Postives = 60/125 (48.00%), Query Frame = 1
Query:  331 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGL----------------DTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYL 657
            NH  FW+ + P   GGG  P   L   I+  FGS    + +  A  A   GSGW WL                  D + K +V+++    +PLV       PLL IDVWEHAYYL ++N +PDY+
Sbjct:  102 NHDFFWECMKP---GGGGKPSGELLELIERDFGSFVKFLDEFKAAAATQFGSGWAWLAYRARKFDGENVANPPSPDEDNKLVVLKSPNAVNPLVWGG--YYPLLTIDVWEHAYYLDFQNRRPDYI 221          

HSP 2 Score: 37.7354 bits (86), Expect = 1.573e-18
Identity = 15/35 (42.86%), Postives = 21/35 (60.00%), Query Frame = 2
Query:  137 PYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAV 241
            PY  + LEP +S + ++ H  KHH+ YV N  K V
Sbjct:   33 PYPLNGLEPVMSQQTLEFHWGKHHKTYVENLKKQV 67          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCCE (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium celatum GN=sodA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.103e-18
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD---PLVTKAPTLVPLLGIDVWEHA 618
            GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG D   ++L++    +     PL      +VPLL +D+WEHA
Sbjct:   45 GHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDKFRAQFHAAATTVQGSGWAALGWDNLGEKLLIFQVYDHQSNFPL-----GVVPLLLLDMWEHA 138          

HSP 2 Score: 39.2762 bits (90), Expect = 2.103e-18
Identity = 19/42 (45.24%), Postives = 25/42 (59.52%), Query Frame = 2
Query:  191 HHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            HH KHH  YV   N A+E+L +A  K D STV+  +  + FN
Sbjct:    1 HHSKHHATYVKGANDALEKLEEARAKDDQSTVLLNEKNLAFN 42          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCMR (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium marinum GN=sodA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.626e-18
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 618
            GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA
Sbjct:   45 GHVNHTIWWKNLSP---NGGDKPTGELAAAIDEAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138          

HSP 2 Score: 34.6538 bits (78), Expect = 4.626e-18
Identity = 17/41 (41.46%), Postives = 23/41 (56.10%), Query Frame = 2
Query:  194 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            H KHH  YV   N AV +L +A  K D ST++  +  + FN
Sbjct:    2 HSKHHATYVKGANDAVTKLEEARAKEDHSTILLNEKNLAFN 42          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCSZ (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium szulgai GN=sodA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.720e-17
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHA 618
            GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA
Sbjct:   45 GHVNHTIWWKNLSP---NGGDKPTGELAAAIDDAFGSFDTFSAQFHAASTTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHA 138          

HSP 2 Score: 31.9574 bits (71), Expect = 1.720e-17
Identity = 15/41 (36.59%), Postives = 23/41 (56.10%), Query Frame = 2
Query:  194 HQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            H KHH  YV   N AV +L +A  + D S+++  +  + FN
Sbjct:    2 HSKHHATYVKGANDAVAKLEEARAQEDFSSILLSEKNLAFN 42          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODF_BABBO2.364e-2038.52Superoxide dismutase [Fe] OS=Babesia bovis GN=SODB... [more]
SODM1_HALVO1.144e-1933.33Superoxide dismutase [Mn] 1 OS=Halobacterium volca... [more]
SODM2_HALVO1.145e-1933.33Superoxide dismutase [Mn] 2 OS=Halobacterium volca... [more]
SODF_RHOCA2.518e-1934.43Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODM_MYCMA4.345e-1944.44Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODF_ACIAM1.467e-1835.14Superoxide dismutase [Fe] OS=Acidianus ambivalens ... [more]
SODF_SOYBN1.573e-1836.00Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODM_MYCCE2.103e-1841.18Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCMR4.626e-1843.00Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCSZ1.720e-1743.00Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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