CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCPH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium phlei GN=sodA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.375e-16
Identity = 44/99 (44.44%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 618
            GHVNH+I+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG DT   RL+     +Q   V     ++PLL +D+WEHA
Sbjct:   45 GHVNHTIWWKNLSP---HGGDKPTGDLAAAIDDQFGSFDNFRAQFTAAANGLQGSGWAVLGYDTLGDRLLTFQLYDQQANVPLG--IIPLLLVDMWEHA 138          

HSP 2 Score: 26.1794 bits (56), Expect = 2.375e-16
Identity = 10/22 (45.45%), Postives = 13/22 (59.09%), Query Frame = 2
Query:  194 HQKHHQAYVTNYNKAVEQLFQA 259
            H KHH  YV   N A+ +L +A
Sbjct:    2 HSKHHATYVKGVNDAIAKLEEA 23          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_MYCCH (Superoxide dismutase [Mn] (Fragment) OS=Mycobacterium chelonae GN=sodA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15
Identity = 53/146 (36.30%), Postives = 72/146 (49.32%), Query Frame = 1
Query:  181 YAASSPEASPGLRY*LQQGGRAAFSSFEQSRHFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHA 618
            Y A    A   L    ++G  AA    E++  FH             GHVNHSI+WKNL+P    GG+ P   L  AID  FGS +    + +A    LQGSGW  LG D+  ++L+     +Q   V     ++PLL +D+WEHA
Sbjct:    9 YVAGVNSAVAKLEEAREKGDHAAIFLNEKNLAFHLG-----------GHVNHSIWWKNLSP---NGGDKPTGDLAAAIDDQFGSFDKFQAQFTAAANGLQGSGWAVLGYDSLGQKLLTFQLYDQQANVPLG--IIPLLQVDMWEHA 138          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STROR (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus oralis GN=sodA PE=3 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 7.156e-15
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 600
            GH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+
Sbjct:   60 GHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGL 145          

HSP 2 Score: 40.817 bits (94), Expect = 7.156e-15
Identity = 17/27 (62.96%), Postives = 19/27 (70.37%), Query Frame = 2
Query:  167 ISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            I  E M LHH KHHQAYV N N A+E+
Sbjct:    2 IDAETMHLHHDKHHQAYVNNANAALEK 28          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRMT (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus mitis GN=sodA PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.041e-14
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 600
            GH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+
Sbjct:   60 GHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGL 145          

HSP 2 Score: 39.2762 bits (90), Expect = 2.041e-14
Identity = 16/27 (59.26%), Postives = 18/27 (66.67%), Query Frame = 2
Query:  167 ISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            I  E M LHH KHHQ YV N N A+E+
Sbjct:    2 IDAETMHLHHDKHHQTYVNNANAALEK 28          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRPA (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus parasanguis GN=sodA PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.480e-14
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 600
            GH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW W  ++ E K L V +TANQD  +++  T  P+LG+
Sbjct:   60 GHLNHALFWELMTPEQTA----PSAELAAAIDATFGSFEDFKAAFTAAATTRFGSGWAWSVVNKEGK-LEVTSTANQDTPLSEGKT--PILGL 145          

HSP 2 Score: 38.891 bits (89), Expect = 4.480e-14
Identity = 16/27 (59.26%), Postives = 18/27 (66.67%), Query Frame = 2
Query:  167 ISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            I  E M LHH KHHQ YV N N A+E+
Sbjct:    2 IDEETMHLHHDKHHQTYVNNVNAALEK 28          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRSL (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus salivarius GN=sodA PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.639e-13
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVT--KAPTL 582
            GH+NH++FW+ L+P  +     P + +  AI+  FGS EA  +  +A      GSGW WL ++ E K L V +TANQD  ++  K P L
Sbjct:   60 GHLNHALFWELLSPEKQ----EPTAEVAAAINEAFGSFEAFQEAFTAAATTRFGSGWAWLVVNDEGK-LEVVSTANQDTPISDGKKPIL 143          

HSP 2 Score: 36.5798 bits (83), Expect = 3.639e-13
Identity = 15/27 (55.56%), Postives = 17/27 (62.96%), Query Frame = 2
Query:  167 ISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            I  E M LHH KHH  YV N N A+E+
Sbjct:    2 IDAETMTLHHDKHHATYVANANAALEK 28          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_AQUAE (Superoxide dismutase [Fe] OS=Aquifex aeolicus GN=sodB PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.053e-13
Identity = 46/130 (35.38%), Postives = 68/130 (52.31%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            G V H +++  LAP   GG   P  +L   I+   G L+A   ++ A  AA+   GW  LGLD    RLVV      +  V     L+PL+ ID +EHAYY+ YKN +P Y+   +  +NW   ++ ++K
Sbjct:   78 GVVLHELYFGMLAP---GGKGEPSEALKKKIEEDLGGLDACTNELKA--AAIAFRGWAILGLDIFSGRLVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYIDAFFKNINWDVVNERFEK 200          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_AQUPY (Superoxide dismutase [Fe] OS=Aquifex pyrophilus GN=sodB PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 45/130 (34.62%), Postives = 67/130 (51.54%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            G V H +++  L P   GG   P  +L   I+   G L+A   ++ A  AA+   GW  LGLD    RLVV      +  V     L+PL+ ID +EHAYY+ YKN +P Y+   +  +NW   ++ ++K
Sbjct:   78 GVVLHELYFGMLTP---GGKGEPSEALKKKIEEDIGGLDACTNELKA--AAMAFRGWAILGLDIFSGRLVVNGLDAHN--VYNLTGLIPLIVIDTYEHAYYVDYKNKRPPYIDAFFKNINWDVVNERFEK 200          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRPO (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus porcinus GN=sodA PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 8.395e-12
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGI 600
            GH+NH++FW+ L+P          S +  AID  FGS E+     +    +  GSGW WL ++ E K L V +TANQD  +++     P+LG+
Sbjct:   60 GHLNHALFWELLSPEKT----EVTSDVASAIDEAFGSFESFKDAFTTAATSRFGSGWAWLVVNKEGK-LEVMSTANQDTPISEGKQ--PILGL 145          

HSP 2 Score: 34.2686 bits (77), Expect = 8.395e-12
Identity = 14/24 (58.33%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  176 EIMQLHHQKHHQAYVTNYNKAVEQ 247
            E M LHH KHH  YV N N A+E+
Sbjct:    5 ETMILHHDKHHATYVANANAALEK 28          
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRCB (Superoxide dismutase [Mn/Fe] (Fragment) OS=Streptococcus canis GN=sodA PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 8.395e-12
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTK 570
            GH+NH++FW+ L+P  +       + +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++
Sbjct:   60 GHLNHALFWELLSPEKQ----EITADVAQAIDEAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISE 137          

HSP 2 Score: 35.039 bits (79), Expect = 8.395e-12
Identity = 14/24 (58.33%), Postives = 16/24 (66.67%), Query Frame = 2
Query:  176 EIMQLHHQKHHQAYVTNYNKAVEQ 247
            E M LHH KHH  YV N N A+E+
Sbjct:    5 ETMTLHHDKHHATYVANANAALEK 28          
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_MYCPH2.375e-1644.44Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_MYCCH3.382e-1536.30Superoxide dismutase [Mn] (Fragment) OS=Mycobacter... [more]
SODM_STROR7.156e-1537.63Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRMT2.041e-1437.63Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRPA4.480e-1437.63Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRSL3.639e-1339.33Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODF_AQUAE7.053e-1335.38Superoxide dismutase [Fe] OS=Aquifex aeolicus GN=s... [more]
SODF_AQUPY2.052e-1234.62Superoxide dismutase [Fe] OS=Aquifex pyrophilus GN... [more]
SODM_STRPO8.395e-1236.56Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]
SODM_STRCB8.395e-1234.94Superoxide dismutase [Mn/Fe] (Fragment) OS=Strepto... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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