CN185706 | Citrus Genome Database

Overview


Name	CN185706
Unique Name	CN185706
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	712

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6145	contig	Csv1_Contig6145:33..745.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_MYCTU (Superoxide dismutase [Fe] OS=Mycobacterium tuberculosis GN=sodB PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.174e-37
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1

Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:   72 GHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187

HSP 2 Score: 67.3958 bits (163), Expect = 1.174e-37
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFN 69

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_MYCBO (Superoxide dismutase [Fe] OS=Mycobacterium bovis GN=sodB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.174e-37
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1

Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GHVNH+I+WKNL+P    GG+ P   L  AI   FGS +    +  A    +QGSGW  LG DT   +L++    +     T  P  +VPLL +D+WEHA+YLQYKNVK D+ K  WNV+NW
Sbjct:   72 GHVNHTIWWKNLSP---NGGDKPTGELAAAIADAFGSFDKFRAQFHAAATTVQGSGWAALGWDTLGNKLLIFQVYDHQ---TNFPLGIVPLLLLDMWEHAFYLQYKNVKVDFAKAFWNVVNW 187

HSP 2 Score: 67.3958 bits (163), Expect = 1.174e-37
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 2

Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQLQGAIKFN 316
            TLPDL +DY ALEP ISG+I +LHH KHH  YV   N AV +L +A  K D S ++  +  + FN
Sbjct:    5 TLPDLDWDYGALEPHISGQINELHHSKHHATYVKGANDAVAKLEEARAKEDHSAILLNEKNLAFN 69

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.721e-37
Identity = 63/147 (42.86%), Postives = 92/147 (62.59%), Query Frame = 1

Query:  271 RHFHRRPVAGRYQVQRRG--HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            ++ ++ P A R +++  G  HVNH++FW+ +AP  + GG P   ++  AID  FGS +A  Q+ +  GA   GSGW WL  D + K L + +TANQD  +   P   P+LG DVWEHAYYL+Y+N + +YL N WNV+NW+  +  Y
Sbjct:  100 QNLNQVPEAIRTKIRNNGGGHVNHTMFWQIMAP--KAGGTPT-GAVAKAIDQTFGSFDAFKQQFNKAGADRFGSGWAWLVSDRQGK-LSITSTANQDNPLMSNPNAYPILGNDVWEHAYYLKYQNRRAEYLTNWWNVVNWQAVNQRY 242

HSP 2 Score: 55.8398 bits (133), Expect = 5.721e-37
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 2

Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKV 271
            L  LPYDY+ALEP I  + M+LHH KHH  YV N N           ++V+ L Q LN+V
Sbjct:   46 LDPLPYDYAALEPYIDAQTMRLHHDKHHATYVNNINETLKAYPDLQKQSVDSLIQNLNQV 105

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_BACSU (Superoxide dismutase [Mn] OS=Bacillus subtilis GN=sodA PE=1 SV=5)

HSP 1 Score: 112.849 bits (281), Expect = 9.749e-37
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 1

Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH NH +FW  L+P   GGGEP   +L   I++ FGS +   ++ +A  A   GSGW WL ++    +L + +T NQD  +++  T  P+LG+DVWEHAYYL Y+N +PDY+   WNV+NW   + +Y +
Sbjct:   78 GHANHKLFWTLLSP--NGGGEPT-GALAEEINSVFGSFDKFKEQFAAAAAGRFGSGWAWLVVNNG--KLEITSTPNQDSPLSEGKT--PILGLDVWEHAYYLNYQNRRPDYISAFWNVVNWDEVARLYSE 200

HSP 2 Score: 62.003 bits (149), Expect = 9.749e-37
Identity = 31/57 (54.39%), Postives = 33/57 (57.89%), Query Frame = 2

Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL 295
            LP+LPY Y ALEP I  E M +HH KHH  YVTN NKAVE      NK     V  L
Sbjct:    5 LPELPYAYDALEPHIDKETMTIHHTKHHNTYVTNLNKAVEGNTALANKSVEELVADL 61

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODF_METJ (Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=sodB PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.270e-36
Identity = 60/130 (46.15%), Postives = 81/130 (62.31%), Query Frame = 1

Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH NHS+FWK L P   GGGEP   +L  AI +  G L+   +  +       GSGW WL +  E K+LVVE+T NQD  ++   T  P+LG+DVWEHAYYL+Y+N +P+Y+   +NV+NW   S  YQ+
Sbjct:   76 GHANHSLFWKVLTP--NGGGEPK-GALADAIKSDIGGLDTFKEAFTKAALTRFGSGWAWLSVTPE-KKLVVESTGNQDSPLSTGNT--PILGLDVWEHAYYLKYQNRRPEYIGAFFNVVNWDEVSRRYQE 199

HSP 2 Score: 58.151 bits (139), Expect = 1.270e-36
Identity = 30/72 (41.67%), Postives = 42/72 (58.33%), Query Frame = 2

Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE------QLFQALNKVDTSTVVQLQGAIKFNG 319
            TLP L Y Y+ALEP I  + M++HH KHHQ Y+ N N A+E      +  +AL +   S    L+G ++ NG
Sbjct:    3 TLPPLDYAYTALEPHIDAQTMEIHHTKHHQTYINNVNAALEGTSFANEPVEALLQKLDSLPENLRGPVRNNG 74

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_ENTFA (Superoxide dismutase [Fe] OS=Enterococcus faecalis GN=sodA PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.155e-36
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 1

Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH NH+ FW+ +AP    GG+P   ++  AID  FGS + +            GSGW WL ++    +L + +T NQD  +    T  P+LG+DVWEHAYYL+YKNV+PDY++  WNV+NW   ++++
Sbjct:   78 GHANHTFFWEIMAP--NAGGQPT-GAIKEAIDETFGSFDEMKAAFKTAATGRFGSGWAWLVVNNG--KLEITSTPNQDSPLMDGQT--PVLGLDVWEHAYYLKYKNVRPDYIEAFWNVVNWDKVNELF 198

HSP 2 Score: 63.5438 bits (153), Expect = 2.155e-36
Identity = 28/44 (63.64%), Postives = 31/44 (70.45%), Query Frame = 2

Query:  116 TVTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            T TLP+LPY Y ALEP I  E M LHH KHH  YVTN N A+E+
Sbjct:    2 TYTLPELPYAYDALEPYIDVETMHLHHDKHHNTYVTNLNAAIEK 45

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM1_BACAN (Superoxide dismutase [Mn] 1 OS=Bacillus anthracis GN=sodA1 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.656e-36
Identity = 58/130 (44.62%), Postives = 80/130 (61.54%), Query Frame = 1

Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GH NH+ FW  L+P   GGG+P    L  AI+  FGS +A  ++ +  GA   GSGW WL ++     L V +T NQD  +T+  T  P++G+DVWEHAYYL Y+N +PDY+   WNV++W  A   YQ+
Sbjct:   79 GHANHTFFWTILSP--NGGGQPV-GELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNG--ELEVTSTPNQDSPLTEGKT--PVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQE 201

HSP 2 Score: 57.3806 bits (137), Expect = 3.656e-36
Identity = 31/76 (40.79%), Postives = 42/76 (55.26%), Query Frame = 2

Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN-----------KAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            LP+LPY Y ALEP    E M +HH KHH  Y+TN N           K+VE+L   LN+V  +    ++ A++ NG
Sbjct:    6 LPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEA----IRTAVRNNG 77

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_XANCP (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris GN=sodA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.763e-36
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 1

Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GH NHS+FW  ++P   GGGEP    +  AID   G  E   +  +    +  GSGW WL + T  K++VVE+TANQD  + +  T  P+LG+DVWEHAYYL+Y+N +PDY+   +NV+NW
Sbjct:   77 GHANHSLFWTVMSP--NGGGEPK-GEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSV-TPDKKVVVESTANQDSPLFEGNT--PILGLDVWEHAYYLKYQNRRPDYIGAFYNVVNW 191

HSP 2 Score: 60.8474 bits (146), Expect = 4.763e-36
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNG 319
            TLP LPY Y ALEP I  + M++HH KHHQ Y+ N N A+E    A   V+       S    LQG ++ NG
Sbjct:    4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNG 75

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_XANC8 (Superoxide dismutase [Mn] OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sodA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.763e-36
Identity = 56/121 (46.28%), Postives = 77/121 (63.64%), Query Frame = 1

Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 684
            GH NHS+FW  ++P   GGGEP    +  AID   G  E   +  +    +  GSGW WL + T  K++VVE+TANQD  + +  T  P+LG+DVWEHAYYL+Y+N +PDY+   +NV+NW
Sbjct:   77 GHANHSLFWTVMSP--NGGGEPK-GEVAKAIDKDIGGFEKFKEAFTKAALSRFGSGWAWLSV-TPDKKVVVESTANQDSPLFEGNT--PILGLDVWEHAYYLKYQNRRPDYIGAFYNVVNW 191

HSP 2 Score: 60.8474 bits (146), Expect = 4.763e-36
Identity = 32/72 (44.44%), Postives = 40/72 (55.56%), Query Frame = 2

Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVD------TSTVVQLQGAIKFNG 319
            TLP LPY Y ALEP I  + M++HH KHHQ Y+ N N A+E    A   V+       S    LQG ++ NG
Sbjct:    4 TLPQLPYAYDALEPNIDAQTMEIHHTKHHQTYINNVNAALEGTEYADLPVEELVSKLKSLPENLQGPVRNNG 75

[Close]

BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 6.206e-36
Identity = 54/128 (42.19%), Postives = 79/128 (61.72%), Query Frame = 1

Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NH++FW+ + P        P + L  AID  FGS E      +A      GSGW WL ++ E K L V +TANQD  +++     P+LG+DVWEHAYY++Y+NV+PDY+K  ++V+NW    ++Y
Sbjct:   77 GHLNHALFWELMTPEKTA----PSAELAAAIDATFGSFEEFQAAFTAAATTRFGSGWAWLVVNKEGK-LEVTSTANQDTPISEGKK--PILGLDVWEHAYYVKYRNVRPDYIKAFFSVINWNKVDELY 197

HSP 2 Score: 60.8474 bits (146), Expect = 6.206e-36
Identity = 26/43 (60.47%), Postives = 30/43 (69.77%), Query Frame = 2

Query:  119 VTLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQ 247
            + LP+LPY Y ALEP I  E M LHH KHHQ YV N N A+E+
Sbjct:    3 IILPELPYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEK 45

The following BLAST results are available for this feature:

BLAST of CN185706 vs. ExPASy Swiss-Prot

BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221


Match Name	E-value	Identity	Description
SODF_MYCTU	1.174e-37	46.72	Superoxide dismutase [Fe] OS=Mycobacterium tubercu...	[more]
SODF_MYCBO	1.174e-37	46.72	Superoxide dismutase [Fe] OS=Mycobacterium bovis G...	[more]
SODM1_PLEBO	5.721e-37	42.86	Superoxide dismutase [Mn] 1 OS=Plectonema boryanum...	[more]
SODM_BACSU	9.749e-37	42.31	Superoxide dismutase [Mn] OS=Bacillus subtilis GN=...	[more]
SODF_METJ	1.270e-36	46.15	Superoxide dismutase [Mn/Fe] OS=Methylomonas J GN=...	[more]
SODM_ENTFA	2.155e-36	41.41	Superoxide dismutase [Fe] OS=Enterococcus faecalis...	[more]
SODM1_BACAN	3.656e-36	44.62	Superoxide dismutase [Mn] 1 OS=Bacillus anthracis ...	[more]
SODM_XANCP	4.763e-36	46.28	Superoxide dismutase [Mn] OS=Xanthomonas campestri...	[more]
SODM_XANC8	4.763e-36	46.28	Superoxide dismutase [Mn] OS=Xanthomonas campestri...	[more]
SODM_STRR6	6.206e-36	42.19	Superoxide dismutase [Mn] OS=Streptococcus pneumon...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG