CN185706

Overview
NameCN185706
Unique NameCN185706
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:33..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STAXY (Superoxide dismutase [Mn/Fe] OS=Staphylococcus xylosus GN=sodA PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.274e-34
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FW+ L P  E  G          I   +GSL+A  ++ + + AA  GSGW WL ++     L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   77 GHLNHSLFWELLTPNSEEKGTVVDK-----IKEQWGSLDAFKEEFADKAAARFGSGWAWLVVNNG--NLEIVTTPNQDNPITEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195

HSP 2 Score: 54.6842 bits (130), Expect = 3.274e-34
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY + ALEP I  + M++HH KHH  YVT  N AVE
Sbjct:    5 LPNLPYGFDALEPHIDQQTMEIHHGKHHNTYVTKLNAAVE 44
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STAEP (Superoxide dismutase [Mn/Fe] OS=Staphylococcus epidermidis GN=sodA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.274e-34
Identity = 55/128 (42.97%), Postives = 80/128 (62.50%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FW+ L P  E  GE         I   +GSL+   ++ + + AA  GSGW WL ++    +L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   77 GHLNHSLFWELLTPNSEEKGEVVEK-----IKEQWGSLDEFKKEFADKAAARFGSGWAWLVVNNG--QLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195

HSP 2 Score: 54.6842 bits (130), Expect = 3.274e-34
Identity = 29/75 (38.67%), Postives = 41/75 (54.67%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYN----------KAVEQLFQALNKVDTSTVVQLQGAIKFNG 319
            LP LPY + ALEP I  E M++HH KHH  YVT  N          K++E++   L+ V +     +Q A++ NG
Sbjct:    5 LPKLPYAFDALEPHIDKETMEIHHDKHHNTYVTKLNAVVEGTDLEAKSIEEIVANLDSVPS----DIQTAVRNNG 75
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_STAS1 (Superoxide dismutase [Mn/Fe] OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=sodA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.274e-34
Identity = 55/128 (42.97%), Postives = 79/128 (61.72%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 705
            GH+NHS+FW+ L P  E  G          I   +GSL+A  ++ + + AA  GSGW WL ++     L + TT NQD  +T+  T  P+LG+DVWEHAYYL+Y+N +PDY+   WNV+NW+   ++Y
Sbjct:   77 GHLNHSLFWELLTPNSEEKGTVVDK-----IKEQWGSLDAFKEEFADKAAARFGSGWAWLVVNNG--NLEIVTTPNQDNPLTEGKT--PILGLDVWEHAYYLKYQNKRPDYISAFWNVVNWEKVDELY 195

HSP 2 Score: 55.4546 bits (132), Expect = 3.274e-34
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 2 
Query:  125 LPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVE 244
            LP+LPY + ALEP I  + M++HH KHH  YVT  N AVE
Sbjct:    5 LPNLPYGFDALEPHIDKQTMEIHHDKHHNTYVTKLNAAVE 44
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.548e-34
Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199

HSP 2 Score: 58.9214 bits (141), Expect = 5.548e-34
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALN 265
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFAN 51
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 5.548e-34
Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199

HSP 2 Score: 58.9214 bits (141), Expect = 5.548e-34
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALN 265
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFAN 51
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 9.413e-34
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH NHS+FWK L       G      L  AI+  FGS++    +     A   GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199

HSP 2 Score: 58.5362 bits (140), Expect = 9.413e-34
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 250
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENL 46
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 9.413e-34
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH NHS+FWK L       G      L  AI+  FGS++    +     A   GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199

HSP 2 Score: 58.5362 bits (140), Expect = 9.413e-34
Identity = 25/43 (58.14%), Postives = 29/43 (67.44%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQL 250
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENL 46
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_ECOLI (Superoxide dismutase [Mn] OS=Escherichia coli (strain K12) GN=sodA PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 9.413e-34
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P++G+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPIMGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199

HSP 2 Score: 58.9214 bits (141), Expect = 9.413e-34
Identity = 26/48 (54.17%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALN 265
            TLP LPY Y ALEP    + M++HH KHHQ YV N N A+E L +  N
Sbjct:    4 TLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEFAN 51
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.596e-33
Identity = 59/134 (44.03%), Postives = 79/134 (58.96%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 711
            GHVNH++FWK L       G     +L  AI+  FGS+EA   +         GSGW WL L  E  +L V +TANQD PL+ K    V   P+L +DVWEHAYYL Y+N +PD++K  WNV+NW  A+  +++
Sbjct:   78 GHVNHTLFWKGLKT-----GTTLQGALKEAIERDFGSVEAFQSEFEKAATTRVGSGWAWLVL--EEGKLAVVSTANQDNPLMGKEVAGVSGYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEE 204

HSP 2 Score: 57.3806 bits (137), Expect = 1.596e-33
Identity = 26/58 (44.83%), Postives = 35/58 (60.34%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQL 295
            TLP+L Y Y ALEP    + M++HH KHHQAY+ N N A+E   + L K   + +  L
Sbjct:    4 TLPELGYAYDALEPHFDAKTMEIHHSKHHQAYINNANAALEAHPELLEKCPGALIKDL 61
[Close]
BLAST of CN185706 vs. ExPASy Swiss-Prot
Match: SODM_YEREN (Superoxide dismutase [Mn] OS=Yersinia enterocolitica GN=sodA PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.597e-33
Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 1 
Query:  322 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 696
            GH NHS+FWK L       G      L  AI+  FGS+++  +K  A  A   GSGW WL L  + K L V +TANQD PL+ +A +     P++G+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKL-----GTTLTGDLKAAIERDFGSVDSFKEKFEAAAATRFGSGWAWLVLKDDGK-LAVVSTANQDSPLMGEAVSGASGFPIVGLDVWEHAYYLKFQNRRPDYIKAFWNVVNWDEAA 200

HSP 2 Score: 54.6842 bits (130), Expect = 1.597e-33
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 2 
Query:  122 TLPDLPYDYSALEPAISGEIMQLHHQKHHQAYVTNYNKAVEQLFQALNKVDTSTVVQ 292
            +LP LPY Y ALEP    + M++HH KHHQ YV N N  +E  F  L K     +++
Sbjct:    4 SLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANTVLES-FPELAKFSVEDLIK 59
The following BLAST results are available for this feature:
BLAST of CN185706 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
SODM_STAXY3.274e-3442.97Superoxide dismutase [Mn/Fe] OS=Staphylococcus xyl... [more]
SODM_STAEP3.274e-3442.97Superoxide dismutase [Mn/Fe] OS=Staphylococcus epi... [more]
SODM_STAS13.274e-3442.97Superoxide dismutase [Mn/Fe] OS=Staphylococcus sap... [more]
SODM_SHIFL5.548e-3444.19Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_ECO575.548e-3444.19Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]
SODM_SALTY9.413e-3444.19Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_SALTI9.413e-3444.19Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODM_ECOLI9.413e-3443.41Superoxide dismutase [Mn] OS=Escherichia coli (str... [more]
SODM_PASHA1.596e-3344.03Superoxide dismutase [Mn] OS=Pasteurella haemolyti... [more]
SODM_YEREN1.597e-3345.74Superoxide dismutase [Mn] OS=Yersinia enterocoliti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185706 ID=CN185706; Name=CN185706; organism=Citrus sinensis; type=EST; length=712bp
TTTCGAACGACTCTTAAACGTCACCGTTTCATTCGCGATGGCTCTCCGTT
CGCTCGCCACCAGAAAAGCTATAGGCTTGGGTAAATCCGTAGGATTAGGG
CTACGTGGACTGCAGACGGTCACGCTGCCTGATCTTCCGTACGATTACAG
CGCTTTGGAGCCGGCGATTAGCGGAGAGATTATGCAGCTTCATCACCAGA
AGCATCACCAGGCTTACGTTACTAACTACAACAAGGCGGTCGAGCAGCTT
TTTCAAGCTTTGAACAAAGTCGACACTTCCACCGTCGTCCAGTTGCAGGG
CGCTATCAAGTTCAACGGCGAGGTCATGTCAACCACTCAATTTTCTGGAA
GAATCTTGCTCCTGTTCACGAAGGAGGTGGCGAGCCACCACATAGTTCCC
TTGGTTGGGCTATTGACACGCATTTTGGTTCTCTGGAAGCATTGATACAA
AAGATGAGTGCTGAGGGTGCAGCTTTGCAGGGCTCTGGATGGGTGTGGCT
TGGTTTAGATACAGAGTTTAAAAGGCTTGTGGTTGAAACTACTGCAAATC
AGGATCCACTGGTGACTAAAGCCCCAACTCTGGTTCCTTTGCTTGGTATA
GATGTTTGGGAGCATGCATACTACCTACAGTACAAGAATGTCAAACCAGA
TTATCTGAAAAACATTTGGAACGTAATGAACTGGAAGTATGCTAGTGATG
TGTATCAGAAAG
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