CN185705

Overview
NameCN185705
Unique NameCN185705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:261..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM2_MAIZE (Superoxide dismutase [Mn] 3.2, mitochondrial OS=Zea mays GN=SODA.1 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.142e-57
Identity = 107/160 (66.88%), Postives = 123/160 (76.88%), Query Frame = -2
Query:  318 NKAVEQLFSSFEQSRHFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 797
            NKA+EQL +   +        + G  +    GH NHSIFW+NL P+ EGG EPPH  LGWAID  FGS EAL+++M+AEGAALQGSGWVWL LD E K+L VETTANQDPLVTK  +LVPLLGIDVWEHAYYLQYKNV+PDYL NIW VMNWKYA +VY+
Sbjct:   70 NKALEQLDAVVVKGDASAVVQLQGAIKFNGGGHFNHSIFWENLKPISEGG-EPPHGKLGWAIDEDFGSFEALVKRMNAEGAALQGSGWVWLALDKEPKKLSVETTANQDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIWKVMNWKYAGEVYE 228          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_DICDI (Superoxide dismutase [Mn], mitochondrial OS=Dictyostelium discoideum GN=sod2 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.263e-41
Identity = 77/128 (60.16%), Postives = 92/128 (71.88%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GHVNHSIFW NLAP ++ GG  P   L  AI+  +GS+E LI+KMSAE  A+QGSGW WLG D    RLV++T  NQDPL       VPLLGIDVWEHAYYL YKNV+ DY+KNIW ++NWK  ++ Y
Sbjct:   96 GHVNHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLIEKMSAETTAIQGSGWGWLGYDKANDRLVIQTQQNQDPLSVSG--YVPLLGIDVWEHAYYLDYKNVRADYVKNIWQIVNWKNVAERY 221          

HSP 2 Score: 23.483 bits (49), Expect = 9.263e-41
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = -3
Query:  707 DTSTVVQLQGAIKFNG 754
            D + ++ LQ AIKFNG
Sbjct:   79 DVAQMIALQSAIKFNG 94          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_RAT (Superoxide dismutase [Mn], mitochondrial OS=Rattus norvegicus GN=Sod2 PE=1 SV=2)

HSP 1 Score: 148.673 bits (374), Expect = 3.573e-35
Identity = 74/128 (57.81%), Postives = 88/128 (68.75%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NHSIFW NL+P  +GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  S  Y
Sbjct:   94 GHINHSIFWTNLSP--KGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSQRY 217          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_MOUSE (Superoxide dismutase [Mn], mitochondrial OS=Mus musculus GN=Sod2 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 1.040e-34
Identity = 72/128 (56.25%), Postives = 89/128 (69.53%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NH+IFW NL+P  +GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  RL +   +NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   94 GHINHTIFWTNLSP--KGGGEPKGELLE-AIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGFNKEQGRLQIAACSNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_HORSE (Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.773e-34
Identity = 72/128 (56.25%), Postives = 88/128 (68.75%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NH+IFW NL+P   GGGEP    L  AI   FGS +   +K++A  A +QGSGW WLG + +  RL +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  S+ Y
Sbjct:   94 GHINHTIFWTNLSP--NGGGEPKGKLLD-AIKRDFGSFDKFKEKLTAVSAGVQGSGWGWLGFNKDQGRLQIVACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVSERY 217          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_MACMU (Superoxide dismutase [Mn], mitochondrial OS=Macaca mulatta GN=SOD2 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   70 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_MACFU (Superoxide dismutase [Mn], mitochondrial OS=Macaca fuscata fuscata GN=SOD2 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   70 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 193          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_MACFA (Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 2.316e-34
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   94 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_MACNE (Superoxide dismutase [Mn], mitochondrial OS=Macaca nemestrina GN=SOD2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.025e-34
Identity = 72/128 (56.25%), Postives = 87/128 (67.97%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS E   +K++A    +QGSGW WLG + E  +L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   94 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGFNKERGQLQIAACLNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_PONPY (Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus GN=SOD2 PE=2 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 6.739e-34
Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NHSIFW NL+P   GGGEP    L  AI   FGS +   +K++A    +QGSGW WLG + E   L +    NQDPL      L+PLLGIDVWEHAYYLQYKNV+PDYLK IWNV+NW+  ++ Y
Sbjct:   94 GHINHSIFWTNLSP--NGGGEPKGELLE-AIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPL-QGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERY 217          
The following BLAST results are available for this feature:
BLAST of CN185705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
SODM2_MAIZE1.142e-5766.88Superoxide dismutase [Mn] 3.2, mitochondrial OS=Ze... [more]
SODM_DICDI9.263e-4160.16Superoxide dismutase [Mn], mitochondrial OS=Dictyo... [more]
SODM_RAT3.573e-3557.81Superoxide dismutase [Mn], mitochondrial OS=Rattus... [more]
SODM_MOUSE1.040e-3456.25Superoxide dismutase [Mn], mitochondrial OS=Mus mu... [more]
SODM_HORSE1.773e-3456.25Superoxide dismutase [Mn], mitochondrial OS=Equus ... [more]
SODM_MACMU2.316e-3456.25Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFU2.316e-3456.25Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFA2.316e-3456.25Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACNE3.025e-3456.25Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_PONPY6.739e-3455.47Superoxide dismutase [Mn], mitochondrial OS=Pongo ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185705 ID=CN185705; Name=CN185705; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTGTTACGCCATTAAACAAATAGAAAATAGAACCC
TATTCATACATATTCACAGATCCGTGCACATAGTGAGATACAAAAAGAGC
ATAAACCCCAATATTATTTTGGATGTCACATAAGGGATACACAAGTAACA
CTCACTGCAAAAGAAAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTA
TTGTCACTTCAGCGTGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAA
GAGAGAACCCAGATCAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAA
GCTTAAGGGCATTCTTTCTGATACACATCACTAGCATACTTCCAGTTCAT
TACGTTCCAAATGTTTTTCAGATAATCTGGTTTGACATTCTTGTACTGTA
GGTAGTATGCATGCTCCCAAACATCTATACCAAGCAAAGGAACCAGAGTT
GGGGCTTTAGTCACCAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAG
CCTTTTAAACTCTGTATCTAAACCAAGCCACACCCATCCAGAGCCCTGCA
AAGCTGCACCCTCAGCACTCATCTTTTGTATCAATGCTTCCAGAGAACCA
AAATGCGTGTCAATAGCCCAACCAAGGGAACTATGTGGTGGCTCGCCACC
TCCTTCGTGAACAGGAGCAAGATTCTTCCAGAAAATTGAGTGGTTGACAT
GACCTCGCCGTTGAACTTGATAGCGCCCTGCAACTGGACGACGGTGGAAG
TGTCGACTTTGTTCAAAGCTTGAAAAAAGCTGCTCGACCGCCTTGTTG
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