CN185705

Overview
NameCN185705
Unique NameCN185705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_STRPY (Superoxide dismutase [Mn] OS=Streptococcus pyogenes GN=sodA PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.352e-23
Identity = 52/129 (40.31%), Postives = 81/129 (62.79%), Query Frame = -2
Query:  318 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 704
            GH+NH++FW+ L+P  +         +  AID  FGS +A  ++ +A      GSGW WL ++ E  +L + +TANQD  +++     P+L +DVWEHAYYL Y+NV+P+Y+K  + ++NWK  S +YQ
Sbjct:   77 GHLNHALFWELLSPEKQD----VTPDVAQAIDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVNKE-GQLEITSTANQDTPISEGKK--PILALDVWEHAYYLNYRNVRPNYIKAFFEIINWKKVSALYQ 198          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_DEIRA (Superoxide dismutase [Mn] OS=Deinococcus radiodurans GN=sodA PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 9.129e-23
Identity = 60/133 (45.11%), Postives = 77/133 (57.89%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVH-EGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH NHS+FW+ +     + G   P   L  AI++ FGS +A  QK         GSGW WL +     +L V +TANQD PL+ +A   V   P+LG+DVWEHAYYL Y+N +PDYL   WNV+NW   S  Y
Sbjct:   77 GHANHSMFWQIMGQGQGQNGANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDG--KLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRY 207          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_PASHA (Superoxide dismutase [Mn] OS=Pasteurella haemolytica GN=sodA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.192e-22
Identity = 59/135 (43.70%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  312 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQKE 704
            GHVNH++FWK L       G     +L  AI+  FGS+EA   +         GSGW WL L  E  +L V +TANQD PL+ K    V   P+L +DVWEHAYYL Y+N +PD++K  WNV+NW  A+  ++++
Sbjct:   78 GHVNHTLFWKGLKT-----GTTLQGALKEAIERDFGSVEAFQSEFEKAATTRVGSGWAWLVL--EEGKLAVVSTANQDNPLMGKEVAGVSGYPILVLDVWEHAYYLNYQNRRPDFIKAFWNVVNWDEAARRFEEK 205          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_SHIFL (Superoxide dismutase [Mn] OS=Shigella flexneri GN=sodA PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.557e-22
Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = -2
Query:  330 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 704
            GH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_PSEPU (Superoxide dismutase [Mn] OS=Pseudomonas putida GN=sodA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.557e-22
Identity = 53/121 (43.80%), Postives = 75/121 (61.98%), Query Frame = -2
Query:  342 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 704
            GH NHS+FW  ++P  +GGGEP H  L  AI +  G  +A  +  +       GSGW WL + T  K LVVE++ NQD  +    T  P+ G+DVWEHAYYL+Y+N +P+Y+   +NV++W
Sbjct:   77 GHANHSLFWTVMSP--QGGGEP-HGQLAQAIASQLGGFDAFKEAFTKAALTRFGSGWAWLSV-TPQKTLVVESSGNQDSPLMFGNT--PIFGLDVWEHAYYLKYQNRRPEYIGAFYNVIDW 191          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_ECO57 (Superoxide dismutase [Mn] OS=Escherichia coli O157:H7 GN=sodA PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.557e-22
Identity = 57/129 (44.19%), Postives = 78/129 (60.47%), Query Frame = -2
Query:  330 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 704
            GH NHS+FWK L       G      L  AI+  FGS++    +     A+  GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_SALTY (Superoxide dismutase [Mn] OS=Salmonella typhimurium GN=sodA PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 2.034e-22
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  330 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 704
            GH NHS+FWK L       G      L  AI+  FGS++    +     A   GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_SALTI (Superoxide dismutase [Mn] OS=Salmonella typhi GN=sodA PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 2.034e-22
Identity = 57/129 (44.19%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  330 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKA---PTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 704
            GH NHS+FWK L       G      L  AI+  FGS++    +     A   GSGW WL L  +  +L V +TANQD PL+ +A    +  P+LG+DVWEHAYYL+++N +PDY+K  WNV+NW  A+
Sbjct:   78 GHANHSLFWKGLKK-----GTTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGD--KLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAA 199          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODB_ASPNG (Superoxide dismutase [Mn], mitochondrial OS=Aspergillus niger GN=sodB PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.034e-22
Identity = 55/130 (42.31%), Postives = 74/130 (56.92%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHS--SLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NHS+FWKNLA           S  SL  AI+  +GS++       A    +QGSGW WL    +   L + TT +QDP+       +P+ G+D+WEHAYYLQY N K  Y++NIW V+NW+ A   Y
Sbjct:   73 GHINHSLFWKNLARYDSPATNLERSAPSLKDAIEKQWGSVKNFTDAFEAVLLGIQGSGWGWLVSSGKTGFLEIVTTKDQDPVTGP----IPVFGVDMWEHAYYLQYLNNKASYVQNIWKVINWEEAEHRY 198          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_PSEAE (Superoxide dismutase [Mn] OS=Pseudomonas aeruginosa GN=sodA PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.656e-22
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH NHS+FW  ++P  +GGG P    LG AID   G  EA     +       GSGW WL + T    L+VE++ NQD  +    T  P+LG+DVWEHAYYL+Y+N +P+Y+   +NV++W+  +  Y
Sbjct:   77 GHANHSLFWTVMSP--QGGGRPD-GDLGRAIDEQLGGFEAFKDAFTKAALTRFGSGWAWLSV-TPQGSLLVESSGNQDSPLMNGNT--PILGLDVWEHAYYLKYQNRRPEYIGAFYNVIDWREVARRY 198          
The following BLAST results are available for this feature:
BLAST of CN185705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
SODM_STRPY5.352e-2340.31Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_DEIRA9.129e-2345.11Superoxide dismutase [Mn] OS=Deinococcus radiodura... [more]
SODM_PASHA1.192e-2243.70Superoxide dismutase [Mn] OS=Pasteurella haemolyti... [more]
SODM_SHIFL1.557e-2244.19Superoxide dismutase [Mn] OS=Shigella flexneri GN=... [more]
SODM_PSEPU1.557e-2243.80Superoxide dismutase [Mn] OS=Pseudomonas putida GN... [more]
SODM_ECO571.557e-2244.19Superoxide dismutase [Mn] OS=Escherichia coli O157... [more]
SODM_SALTY2.034e-2244.19Superoxide dismutase [Mn] OS=Salmonella typhimuriu... [more]
SODM_SALTI2.034e-2244.19Superoxide dismutase [Mn] OS=Salmonella typhi GN=s... [more]
SODB_ASPNG2.034e-2242.31Superoxide dismutase [Mn], mitochondrial OS=Asperg... [more]
SODM_PSEAE2.656e-2242.19Superoxide dismutase [Mn] OS=Pseudomonas aeruginos... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185705 ID=CN185705; Name=CN185705; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTGTTACGCCATTAAACAAATAGAAAATAGAACCC
TATTCATACATATTCACAGATCCGTGCACATAGTGAGATACAAAAAGAGC
ATAAACCCCAATATTATTTTGGATGTCACATAAGGGATACACAAGTAACA
CTCACTGCAAAAGAAAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTA
TTGTCACTTCAGCGTGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAA
GAGAGAACCCAGATCAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAA
GCTTAAGGGCATTCTTTCTGATACACATCACTAGCATACTTCCAGTTCAT
TACGTTCCAAATGTTTTTCAGATAATCTGGTTTGACATTCTTGTACTGTA
GGTAGTATGCATGCTCCCAAACATCTATACCAAGCAAAGGAACCAGAGTT
GGGGCTTTAGTCACCAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAG
CCTTTTAAACTCTGTATCTAAACCAAGCCACACCCATCCAGAGCCCTGCA
AAGCTGCACCCTCAGCACTCATCTTTTGTATCAATGCTTCCAGAGAACCA
AAATGCGTGTCAATAGCCCAACCAAGGGAACTATGTGGTGGCTCGCCACC
TCCTTCGTGAACAGGAGCAAGATTCTTCCAGAAAATTGAGTGGTTGACAT
GACCTCGCCGTTGAACTTGATAGCGCCCTGCAACTGGACGACGGTGGAAG
TGTCGACTTTGTTCAAAGCTTGAAAAAAGCTGCTCGACCGCCTTGTTG
back to top