CN185705

Overview
NameCN185705
Unique NameCN185705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM2_STAA3 (Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus aureus (strain USA300) GN=sodM PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.917e-22
Identity = 56/142 (39.44%), Postives = 81/142 (57.04%), Query Frame = -2
Query:  318 PVAGRYQVQRRG--HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 737
            P A R  V+  G  H NHS+FW+ L+P  E  G          I   +G+L+    + + +   L GSGW WL ++    +L + TT NQD  +T+  T  P+L  DVWEHAYYL+Y+N +PDY+   WN++NWK   ++YQ
Sbjct:   64 PEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGGVIDD-----IKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDG--KLEIVTTPNQDNPLTEGKT--PILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQ 196          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_AERPE (Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix GN=sod PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.917e-22
Identity = 57/152 (37.50%), Postives = 79/152 (51.97%), Query Frame = -2
Query:  342 NKAVEQLFSSFEQSRHFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 797
            N A+E++    +       R V   +     GH+ H+IFW N+AP  +GGG P    +   I+  FG  E      SA    ++G GW  L  D   + L +      + L+T    LVP+L IDVWEHAYYLQYKN +  Y++N WNV+NW
Sbjct:   44 NAALEKIEKHLKGEIQIDVRAVMRDFSFNYAGHIMHTIFWPNMAPPGKGGGTPG-GRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWGVLAFDPLTEELRILQVEKHNVLMTAG--LVPILVIDVWEHAYYLQYKNDRGSYVENWWNVVNW 192          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM2_PLEBO (Superoxide dismutase [Mn] 2 OS=Plectonema boryanum GN=sodA2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.009e-21
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = -2
Query:  339 HFHRRPVAGRYQVQRR--GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 752
            H  R P   R  V+    GHVNH++FW+ +      G   P  ++  AI+  FGS +A  Q+ +  G    GSGWVWL + ++   L + +T NQD  + +  T  P++G DVWEHAYYL+Y+N +P+YL   WNV+NW+
Sbjct:   60 HLDRVPEDVRTTVRNNAGGHVNHTMFWEIMGA---NGSGAPTGAISEAINNSFGSFDAFKQQFNDAGTKRFGSGWVWL-VRSQQGDLQILSTPNQDSPLIEGHT--PIMGNDVWEHAYYLKYQNRRPEYLNAWWNVLNWE 193          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_PETMA (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Petromyzon marinus PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.249e-21
Identity = 55/96 (57.29%), Postives = 63/96 (65.62%), Query Frame = -2
Query:  420 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPT-LVPLLGIDV 704
            GH+NHSIFW NL+P    GG  P   L  AI+T FGS   L +KMSA   A+QGSGW WLG D E  RL +   ANQDPL  +A T L+PLLGIDV
Sbjct:   54 GHINHSIFWTNLSP---NGGGAPTGDLQKAIETDFGSFTKLQEKMSAVSVAVQGSGWGWLGYDKETGRLRIAACANQDPL--QATTGLIPLLGIDV 144          

HSP 2 Score: 24.6386 bits (52), Expect = 2.249e-21
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = -3
Query:  707 QALNKVDTSTVVQLQGAIKFNG 772
            +A+ K D +  + LQ AIKFNG
Sbjct:   31 EAVAKGDVTAEIALQPAIKFNG 52          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.937e-21
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  318 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 704
            GH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+NV+P+Y+K  + ++NW   +++YQ
Sbjct:   77 GHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQ 198          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.937e-21
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  318 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 704
            GH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+NV+P+Y+K  + ++NW   +++YQ
Sbjct:   77 GHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQ 198          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.937e-21
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  318 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 704
            GH+NH++FW+ ++P      +     L   I+  FGS E      +A      GSGW WL ++ E K L V +TANQD  + +     P+LG+DVWEHAYYL Y+NV+P+Y+K  + ++NW   +++YQ
Sbjct:   77 GHLNHALFWELMSPEETQISQ----ELSEDINATFGSFEDFKAAFTAAATGRFGSGWAWLVVNAEGK-LEVLSTANQDTPIMEGKK--PILGLDVWEHAYYLNYRNVRPNYIKAFFEIINWNKVNELYQ 198          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_PORGI (Superoxide dismutase [Mn/Fe] OS=Porphyromonas gingivalis GN=sodB PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.836e-21
Identity = 53/126 (42.06%), Postives = 71/126 (56.35%), Query Frame = -2
Query:  321 VNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 698
            +NH++++    P   G G  P   LG AID  FGS E   ++ +  G  L GSGWVWL  D   K L +E   N    V K   L PLLG DVWEHAYYL Y+N + D+LK++W++++W      Y
Sbjct:   72 LNHNLYFTQFRP---GKGGAPKGKLGEAIDKQFGSFEKFKEEFNTAGTTLFGSGWVWLASDANGK-LSIEKEPNAGNPVRKG--LNPLLGFDVWEHAYYLTYQNRRADHLKDLWSIVDWDIVESRY 191          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 5.009e-21
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH+NH++FW+ L+P          + +  AI+  FGS +      +A      GSGW WL +D E K L V +TANQD  +++   L P+L +DVWEHAYYL Y+NV+P+Y+K  + V+NW   + +Y
Sbjct:   77 GHLNHALFWELLSPEKT----KVTAEVAAAINEAFGSFDDFKAAFTAAATTRFGSGWAWLVVDKEGK-LEVTSTANQDTPISQG--LKPILALDVWEHAYYLNYRNVRPNYIKAFFEVINWNTVARLY 197          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_BUCAI (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sodA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 54/134 (40.30%), Postives = 79/134 (58.96%), Query Frame = -2
Query:  315 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQD-PLVTKAPTLV---PLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            GH+NHS FWK+L       G    + L   I+  FG+++   +K  +      GSGWVWL        +V  +T NQD PL+ K  +     P++G+D+WEHAYYL+Y+N + DY+K+ WNV+NW+ AS+  QK
Sbjct:   77 GHINHSFFWKSLK-----SGTVLTNDLKIEIEKQFGTIDEFKEKFESVALNHFGSGWVWLVNQNGVLSIV--STVNQDSPLMGKLISNTYGYPIIGLDIWEHAYYLKYQNRRLDYIKSFWNVVNWEEASNRLQK 203          
The following BLAST results are available for this feature:
BLAST of CN185705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
SODM2_STAA35.917e-2239.44Superoxide dismutase [Mn/Fe] 2 OS=Staphylococcus a... [more]
SODF_AERPE5.917e-2237.50Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix G... [more]
SODM2_PLEBO1.009e-2140.00Superoxide dismutase [Mn] 2 OS=Plectonema boryanum... [more]
SODM_PETMA2.249e-2157.29Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_STRAG2.937e-2139.53Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA52.937e-2139.53Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA32.937e-2139.53Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODF_PORGI3.836e-2142.06Superoxide dismutase [Mn/Fe] OS=Porphyromonas ging... [more]
SODM_STRMU5.009e-2140.63Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODM_BUCAI1.116e-2040.30Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185705 ID=CN185705; Name=CN185705; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTGTTACGCCATTAAACAAATAGAAAATAGAACCC
TATTCATACATATTCACAGATCCGTGCACATAGTGAGATACAAAAAGAGC
ATAAACCCCAATATTATTTTGGATGTCACATAAGGGATACACAAGTAACA
CTCACTGCAAAAGAAAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTA
TTGTCACTTCAGCGTGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAA
GAGAGAACCCAGATCAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAA
GCTTAAGGGCATTCTTTCTGATACACATCACTAGCATACTTCCAGTTCAT
TACGTTCCAAATGTTTTTCAGATAATCTGGTTTGACATTCTTGTACTGTA
GGTAGTATGCATGCTCCCAAACATCTATACCAAGCAAAGGAACCAGAGTT
GGGGCTTTAGTCACCAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAG
CCTTTTAAACTCTGTATCTAAACCAAGCCACACCCATCCAGAGCCCTGCA
AAGCTGCACCCTCAGCACTCATCTTTTGTATCAATGCTTCCAGAGAACCA
AAATGCGTGTCAATAGCCCAACCAAGGGAACTATGTGGTGGCTCGCCACC
TCCTTCGTGAACAGGAGCAAGATTCTTCCAGAAAATTGAGTGGTTGACAT
GACCTCGCCGTTGAACTTGATAGCGCCCTGCAACTGGACGACGGTGGAAG
TGTCGACTTTGTTCAAAGCTTGAAAAAAGCTGCTCGACCGCCTTGTTG
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