CN185705

Overview
NameCN185705
Unique NameCN185705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6145 contig Csv1_Contig6145:261..1058. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM2_BACAN (Superoxide dismutase [Mn] 2 OS=Bacillus anthracis GN=sodA2 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 57/159 (35.85%), Postives = 91/159 (57.23%), Query Frame = -2
Query:  321 NKAVEQLFSSFEQSRHFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 797
            NK++E+L  + E       + +    +    GH  HS+FW+ ++P   GGGEP +  +   ID +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:   52 NKSLEELLCNLETLP----KEIVTAVRNNGGGHYCHSLFWEVMSP--RGGGEP-NGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDRVNEKY 199          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM2_BACCR (Superoxide dismutase [Mn] 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.904e-20
Identity = 52/128 (40.62%), Postives = 79/128 (61.72%), Query Frame = -2
Query:  321 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVY 704
            GH  HS+FW+ ++P   GGGEP +  +   ID +F + + L  ++S    +  GSG+ WL LD E   L V +T NQD  + +    +PLL IDVWEHAYYL+Y+N +P+++ N W+ +NW   ++ Y
Sbjct:   79 GHYCHSLFWEVMSP--RGGGEP-NGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDGE--ELSVMSTPNQDTPLQEGK--IPLLVIDVWEHAYYLKYQNRRPEFVTNWWHTVNWDQVNEKY 199          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_METTH (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum GN=sod PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.234e-19
Identity = 49/122 (40.16%), Postives = 66/122 (54.10%), Query Frame = -2
Query:  339 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWK 704
            G+V H  FW N+ P  E GGEP    L   I+  FGS E   ++ S    + +GSGW  L       RL +      +  V   P    LL +DVWEHAYY+ Y+NV+PDY++  WN++NWK
Sbjct:   77 GYVLHLFFWGNMGPADECGGEPS-GKLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAVLTYCQRTDRLFIMQVEKHN--VNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVEAFWNIVNWK 195          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_SULAC (Superoxide dismutase [Fe] OS=Sulfolobus acidocaldarius GN=sod PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.611e-19
Identity = 53/130 (40.77%), Postives = 70/130 (53.85%), Query Frame = -2
Query:  315 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            GH  H+I+W N+AP  +GGG+P   +L   I+  +GS +   Q  S    +L GSGW  L  D E   L + T  N    +     L  +L +D +EHAYYLQYKN + DYL   WNV+NW  A    QK
Sbjct:   81 GHKLHAIYWNNMAPAGKGGGKPG-GALADLINKQYGSFDRFKQVFSESANSLPGSGWTVLYYDNESGNLQIMTVENH--FMNHIAELPVILIVDEFEHAYYLQYKNKRGDYLNAWWNVVNWDDAEKRLQK 207          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_EPTST (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Eptatretus stoutii PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.105e-19
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = -2
Query:  420 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 704
            GH+NHSIFW+NL+P   GGG+P    L  AI+  FGS++ L +K+ A    +QGSGW WLG + E KRL + T ANQDPL      L PLLGIDV
Sbjct:   54 GHINHSIFWRNLSP--SGGGQPCGDLLK-AIENDFGSVDKLREKLVAAAVGVQGSGWAWLGFNKESKRLQIATCANQDPL-QGTTGLFPLLGIDV 144          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_PSEHT (Superoxide dismutase [Fe] OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=sodB PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.105e-19
Identity = 44/122 (36.07%), Postives = 72/122 (59.02%), Query Frame = -2
Query:  330 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 695
            NH+ +W +L+P    GG  P  ++  AI+  +GS +A  + ++ +     GS W WL    +    +V T+    PL     T  P+L +D+WEHAYY+ Y+NV+PDYLK  W+++NW++A+
Sbjct:   72 NHTFYWNSLSP---NGGGAPTGAVADAINAKWGSFDAFKEALNDKAVNNFGSSWTWLVKLADGSLDIVNTSNAATPLTDDGVT--PILTVDLWEHAYYIDYRNVRPDYLKGFWSLVNWEFAN 188          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_PYRAE (Superoxide dismutase [Fe] OS=Pyrobaculum aerophilum GN=sod PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.749e-19
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = -2
Query:  342 NKAVEQLFSSFEQSRHFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNW 797
            N A+E+L    +       R V         GH+ HSIFW N+AP  +GGG+P    +   I+  FGS E   ++ S     ++G GW  L  +   ++L++      +  +  A     LL +DVWEHAYYLQYKN +  Y+ N WNV+NW
Sbjct:   44 NAALEKLEKFRKGEAQIDIRAVLRDLSFHLNGHILHSIFWPNMAPPGKGGGKPG-GKIADLINKFFGSFEKFKEEFSQAAKNVEGVGWAILVYEPLEEQLLILQIEKHN--LMHAADAQVLLALDVWEHAYYLQYKNDRGSYVDNWWNVVNW 192          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_LEGPH (Superoxide dismutase [Fe] OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=sodB PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.749e-19
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = -2
Query:  330 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 695
            NH+ +W +++P   GGGEP    L  AI+  FGS  A  ++ S   A   GSGW WL  D      ++ T+    P+      L  LL  DVWEHAYY+ Y+N +PDY++  W+++NW +AS
Sbjct:   73 NHTFYWHSMSP--NGGGEPK-GRLAEAINKSFGSFAAFKEQFSQTAATTFGSGWAWLVQDQSGALKIINTSNAGTPMTEG---LNALLTCDVWEHAYYIDYRNRRPDYIEAFWSLVNWDFAS 188          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_BORPE (Superoxide dismutase [Fe] OS=Bordetella pertussis GN=sodB PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.749e-19
Identity = 48/122 (39.34%), Postives = 70/122 (57.38%), Query Frame = -2
Query:  330 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYAS 695
            NH+ +W +L+P   GGGEP   +L  AI   +GS++A  +  +   A   GSGW WL    +    +V T+    PL T    L   L  DVWEHAYY+ Y+N +P YL+N W ++NW++A+
Sbjct:   73 NHTFYWNSLSP--NGGGEPS-GALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKAL---LTCDVWEHAYYIDYRNARPKYLENFWALVNWEFAA 188          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM_BRAFL (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 58/126 (46.03%), Postives = 68/126 (53.97%), Query Frame = -2
Query:  420 NKAVEQLFSSFEQSRHFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDV 797
            N A EQL  +  +        +    +    GH+NHSIFW NL P   GGGEP    L  AI   FGS EA  +KM+A   A+QGSGW WLGLD   K+L +    NQDPL      L PLLGIDV
Sbjct:   23 NAAEEQLAEAIHKQDVTKMIALQSAIKFNGGGHINHSIFWNNLCP--SGGGEPT-GPLAEAITRDFGSFEAFKEKMTAATVAVQGSGWGWLGLDPTSKKLRIVACPNQDPL-EGTTGLKPLLGIDV 144          
The following BLAST results are available for this feature:
BLAST of CN185705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
SODM2_BACAN1.116e-2035.85Superoxide dismutase [Mn] 2 OS=Bacillus anthracis ... [more]
SODM2_BACCR1.904e-2040.63Superoxide dismutase [Mn] 2 OS=Bacillus cereus (st... [more]
SODF_METTH1.234e-1940.16Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODF_SULAC1.611e-1940.77Superoxide dismutase [Fe] OS=Sulfolobus acidocalda... [more]
SODM_EPTST2.105e-1953.68Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODF_PSEHT2.105e-1936.07Superoxide dismutase [Fe] OS=Pseudoalteromonas hal... [more]
SODF_PYRAE2.749e-1935.53Superoxide dismutase [Fe] OS=Pyrobaculum aerophilu... [more]
SODF_LEGPH2.749e-1939.34Superoxide dismutase [Fe] OS=Legionella pneumophil... [more]
SODF_BORPE2.749e-1939.34Superoxide dismutase [Fe] OS=Bordetella pertussis ... [more]
SODM_BRAFL4.689e-1946.03Superoxide dismutase [Mn], mitochondrial (Fragment... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185705 ID=CN185705; Name=CN185705; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTGTTACGCCATTAAACAAATAGAAAATAGAACCC
TATTCATACATATTCACAGATCCGTGCACATAGTGAGATACAAAAAGAGC
ATAAACCCCAATATTATTTTGGATGTCACATAAGGGATACACAAGTAACA
CTCACTGCAAAAGAAAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTA
TTGTCACTTCAGCGTGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAA
GAGAGAACCCAGATCAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAA
GCTTAAGGGCATTCTTTCTGATACACATCACTAGCATACTTCCAGTTCAT
TACGTTCCAAATGTTTTTCAGATAATCTGGTTTGACATTCTTGTACTGTA
GGTAGTATGCATGCTCCCAAACATCTATACCAAGCAAAGGAACCAGAGTT
GGGGCTTTAGTCACCAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAG
CCTTTTAAACTCTGTATCTAAACCAAGCCACACCCATCCAGAGCCCTGCA
AAGCTGCACCCTCAGCACTCATCTTTTGTATCAATGCTTCCAGAGAACCA
AAATGCGTGTCAATAGCCCAACCAAGGGAACTATGTGGTGGCTCGCCACC
TCCTTCGTGAACAGGAGCAAGATTCTTCCAGAAAATTGAGTGGTTGACAT
GACCTCGCCGTTGAACTTGATAGCGCCCTGCAACTGGACGACGGTGGAAG
TGTCGACTTTGTTCAAAGCTTGAAAAAAGCTGCTCGACCGCCTTGTTG
back to top