CN185705

Overview
NameCN185705
Unique NameCN185705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_ACIAM (Superoxide dismutase [Fe] OS=Acidianus ambivalens GN=sod PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.782e-18
Identity = 52/148 (35.14%), Postives = 77/148 (52.03%), Query Frame = -2
Query:  315 AGRYQVQR---------RGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 731
            +G+Y +Q           GH  HS++W+N+AP  +GGG+P    +G  I+  +GS E      +    +L G+GW  L  + E   L + T  N          L  LL +D +EHAYYLQYKN + DY+ N WN++NW +A    Q+
Sbjct:   63 SGQYDIQGLLRGLVFNINGHKLHSLYWQNMAPAGKGGGKPG-GVIGDLIEKQYGSFEKFKALFTEAANSLPGTGWTVLYYEVENGNLQIMTFENH--FQNHIAELPILLILDEFEHAYYLQYKNKRADYVNNWWNLVNWDFADKKLQQ 207          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.969e-18
Identity = 51/126 (40.48%), Postives = 65/126 (51.59%), Query Frame = -2
Query:  321 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKN-IWNVMNWKYASDVY 695
            NHS +W ++ P    GG  P  +L   I   FGS E  + +     A   GSGW WL LD     L +  T N D  +    T  PLL IDVWEHAYYL Y+N +PDY+   +  + NW +AS  Y
Sbjct:   78 NHSFYWNSIKP---NGGGAPTGALADKIAADFGSFENFVTEFKQAAATQFGSGWAWLVLDNG--TLKITKTGNADTPIAHGQT--PLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANY 196          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_PLAVI (Superoxide dismutase [Fe] OS=Plasmodium vivax GN=SODB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.969e-18
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  315 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 695
            NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:   73 NHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_PLAFX (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate HB3) GN=SODB PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.969e-18
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  315 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 695
            NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:   73 NHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_PLAFA (Superoxide dismutase [Fe] OS=Plasmodium falciparum GN=SODB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.969e-18
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  315 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 695
            NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:   73 NHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_PLAF7 (Superoxide dismutase [Fe] OS=Plasmodium falciparum (isolate 3D7) GN=SODB PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.969e-18
Identity = 45/127 (35.43%), Postives = 73/127 (57.48%), Query Frame = -2
Query:  315 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 695
            NH+ +W ++ P  + GGEP H  +   I   FGS     ++ S       GSGW WL L+   K ++++T    +P+  K  T +P+L  D+WEHAYY+ Y+N +  Y+K  WN++NW +A++  +K
Sbjct:   73 NHTFYWDSMGP--DCGGEP-HGEIKEKIQEDFGSFNNFKEQFSNILCGHFGSGWGWLALNNNNKLVILQTHDAGNPI--KDNTGIPILTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFANENLKK 194          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 51/124 (41.13%), Postives = 71/124 (57.26%), Query Frame = -2
Query:  330 NHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTAN-QDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIW-NVMNWKYAS 695
            NH  FW+++ P   GGGEP    L   I+  FGS +A +++  A  A   GSGW WL    E K+L +  T N ++PLV       PLL IDVWEHAYYL ++N +PDY+      +++W+  S
Sbjct:   77 NHQFFWESMKP--NGGGEPSGELLE-LINRDFGSYDAFVKEFKAAAATQFGSGWAWLAYKPEEKKLALVKTPNAENPLVLG---YTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVS 194          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_SULSO (Superoxide dismutase [Fe] OS=Sulfolobus solfataricus GN=sod PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 49/130 (37.69%), Postives = 71/130 (54.62%), Query Frame = -2
Query:  315 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            GH  H+++W+N+AP  +GGG+P   +L   I+  +GS +   Q  +    +L G+GW  L  DTE   L + T  N          +  +L +D +EHAYYLQYKN + DY+   WNV+NW  A    QK
Sbjct:   81 GHKLHALYWENMAPSGKGGGKPG-GALADLINKQYGSFDRFKQVFTETANSLPGTGWAVLYYDTESGNLQIMTFENH--FQNHIAEIPIILILDEFEHAYYLQYKNKRADYVNAWWNVVNWDAAEKKLQK 207          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_STRCO (Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coelicolor GN=sodF1 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 51/133 (38.35%), Postives = 71/133 (53.38%), Query Frame = -2
Query:  318 GHVNHSIFWKNLAPVHEGGGEPPHSS----LGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQ 704
            GH+ HSI+W N+    +GGGEP        L  AI   FGS      +++   A  QGSGW  L  +    RL+VE   +    V +  T  P+L  D WEHA+YLQYKN K D++  +W V+NW+  +  Y+
Sbjct:   72 GHILHSIYWHNMTG--DGGGEPLDKDGVGELADAIAESFGSFAGFRAQLTKAAATTQGSGWGVLAYEPLSGRLIVEQIYDHQGNVGQGST--PILVFDAWEHAFYLQYKNQKVDFIDAMWAVVNWQDVARRYE 200          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODF_COXBU (Superoxide dismutase [Fe] OS=Coxiella burnetii GN=sodB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = -2
Query:  336 HVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKY 701
            H NH+ +W  ++P  +GGG+P    L  AID  FGSLE      +       GSGW WL  D   K  V+ T   ++P+        PL+  DVWEHAYY+  +N +P Y+ N W V+NW +
Sbjct:   71 HWNHTFYWHCMSP--DGGGDPS-GELASAIDKTFGSLEKFKALFTDSANNHFGSGWAWLVKDNNGKLEVLSTVNARNPMTEGKK---PLMTCDVWEHAYYIDTRNDRPKYVNNFWQVVNWDF 186          
The following BLAST results are available for this feature:
BLAST of CN185705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
SODF_ACIAM1.782e-1835.14Superoxide dismutase [Fe] OS=Acidianus ambivalens ... [more]
SODF_SYNE73.969e-1840.48Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_PLAVI3.969e-1835.43Superoxide dismutase [Fe] OS=Plasmodium vivax GN=S... [more]
SODF_PLAFX3.969e-1835.43Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAFA3.969e-1835.43Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_PLAF73.969e-1835.43Superoxide dismutase [Fe] OS=Plasmodium falciparum... [more]
SODF_NICPL5.184e-1841.13Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_SULSO6.770e-1837.69Superoxide dismutase [Fe] OS=Sulfolobus solfataric... [more]
SODF_STRCO8.843e-1838.35Superoxide dismutase [Fe-Zn] 1 OS=Streptomyces coe... [more]
SODF_COXBU8.843e-1838.52Superoxide dismutase [Fe] OS=Coxiella burnetii GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185705 ID=CN185705; Name=CN185705; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTGTTACGCCATTAAACAAATAGAAAATAGAACCC
TATTCATACATATTCACAGATCCGTGCACATAGTGAGATACAAAAAGAGC
ATAAACCCCAATATTATTTTGGATGTCACATAAGGGATACACAAGTAACA
CTCACTGCAAAAGAAAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTA
TTGTCACTTCAGCGTGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAA
GAGAGAACCCAGATCAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAA
GCTTAAGGGCATTCTTTCTGATACACATCACTAGCATACTTCCAGTTCAT
TACGTTCCAAATGTTTTTCAGATAATCTGGTTTGACATTCTTGTACTGTA
GGTAGTATGCATGCTCCCAAACATCTATACCAAGCAAAGGAACCAGAGTT
GGGGCTTTAGTCACCAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAG
CCTTTTAAACTCTGTATCTAAACCAAGCCACACCCATCCAGAGCCCTGCA
AAGCTGCACCCTCAGCACTCATCTTTTGTATCAATGCTTCCAGAGAACCA
AAATGCGTGTCAATAGCCCAACCAAGGGAACTATGTGGTGGCTCGCCACC
TCCTTCGTGAACAGGAGCAAGATTCTTCCAGAAAATTGAGTGGTTGACAT
GACCTCGCCGTTGAACTTGATAGCGCCCTGCAACTGGACGACGGTGGAAG
TGTCGACTTTGTTCAAAGCTTGAAAAAAGCTGCTCGACCGCCTTGTTG
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