CN185705

Overview
NameCN185705
Unique NameCN185705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length798
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM1_HALSA (Superoxide dismutase [Mn] 1 OS=Halobacterium salinarium GN=sod1 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 2.110e-11
Identity = 45/161 (27.95%), Postives = 71/161 (44.10%), Query Frame = -2
Query:  315 NKAVEQLFSSFEQSRHFHRRPVAGRYQVQRRGHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRLVVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 797
            N A E L  + E   H       G       GH+ H++FW++++P    GG+ P  +L   I   FGS E    +   E AA   SGW  L  D+    L      N D          P+L +DVWEH+YY  Y   +  ++   + V++W   ++ +++
Sbjct:   41 NDAEETLAENRETGDHASTAGALGDVTHNGSGHILHTLFWQSMSPA---GGDEPSGALADRIAADFGSYENW--RAEFEAAASAASGWALLVYDSHSNTLRNVAVDNHDEGALWGSH--PILALDVWEHSYYYDYGPDRGSFVDAFFEVVDWDEPTERFEQ 194          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM2_HALVO (Superoxide dismutase [Mn] 2 OS=Halobacterium volcanii GN=sod2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = -2
Query:  315 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            GH+ H +FW+N++P    GG+ P   L   I   FGS EA   K   E AA   +GW  L  D+   +L  VV    +Q  L    P    +L +DVWEH+YY  Y   + D++   + V++W   +  Y++
Sbjct:   71 GHILHDLFWQNMSPE---GGDEPEGLLAERIAEDFGSYEAW--KGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSHP----ILALDVWEHSYYHDYGPARGDFVSAFFEVVDWDEPAARYEQ 193          
BLAST of CN185705 vs. ExPASy Swiss-Prot
Match: SODM1_HALVO (Superoxide dismutase [Mn] 1 OS=Halobacterium volcanii GN=sod1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.598e-11
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = -2
Query:  315 GHVNHSIFWKNLAPVHEGGGEPPHSSLGWAIDTHFGSLEALIQKMSAEGAALQGSGWVWLGLDTEFKRL--VVETTANQDPLVTKAPTLVPLLGIDVWEHAYYLQYKNVKPDYLKNIWNVMNWKYASDVYQK 704
            GH+ H +FW+N++P    GG+ P   L   I   FGS EA   K   E AA   +GW  L  D+   +L  VV    +Q  L    P    +L +DVWEH+YY  Y   + D++   + V++W   +  Y++
Sbjct:   72 GHILHDLFWQNMSPE---GGDEPEGLLAERIAEDFGSYEAW--KGEFEAAAGAAAGWALLVYDSFSNQLRNVVVDKHDQGALWGSHP----ILALDVWEHSYYHDYGPARGDFVSAFFEVVDWDEPAARYEQ 194          
The following BLAST results are available for this feature:
BLAST of CN185705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 213
Match NameE-valueIdentityDescription
SODM1_HALSA2.110e-1127.95Superoxide dismutase [Mn] 1 OS=Halobacterium salin... [more]
SODM2_HALVO3.598e-1133.33Superoxide dismutase [Mn] 2 OS=Halobacterium volca... [more]
SODM1_HALVO3.598e-1133.33Superoxide dismutase [Mn] 1 OS=Halobacterium volca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001M01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185705 ID=CN185705; Name=CN185705; organism=Citrus sinensis; type=EST; length=798bp
TTTTTTTTTTTTTTTTTGTTACGCCATTAAACAAATAGAAAATAGAACCC
TATTCATACATATTCACAGATCCGTGCACATAGTGAGATACAAAAAGAGC
ATAAACCCCAATATTATTTTGGATGTCACATAAGGGATACACAAGTAACA
CTCACTGCAAAAGAAAGGGTGTCTGTCATCAGTTGCAAATTATCGTTTTA
TTGTCACTTCAGCGTGAAAAGCTGCAAGGGTATTCGCCTCTTGAACCCAA
GAGAGAACCCAGATCAAACAAAGAACTCCATGCTCAAGGAAGAGCTCCAA
GCTTAAGGGCATTCTTTCTGATACACATCACTAGCATACTTCCAGTTCAT
TACGTTCCAAATGTTTTTCAGATAATCTGGTTTGACATTCTTGTACTGTA
GGTAGTATGCATGCTCCCAAACATCTATACCAAGCAAAGGAACCAGAGTT
GGGGCTTTAGTCACCAGTGGATCCTGATTTGCAGTAGTTTCAACCACAAG
CCTTTTAAACTCTGTATCTAAACCAAGCCACACCCATCCAGAGCCCTGCA
AAGCTGCACCCTCAGCACTCATCTTTTGTATCAATGCTTCCAGAGAACCA
AAATGCGTGTCAATAGCCCAACCAAGGGAACTATGTGGTGGCTCGCCACC
TCCTTCGTGAACAGGAGCAAGATTCTTCCAGAAAATTGAGTGGTTGACAT
GACCTCGCCGTTGAACTTGATAGCGCCCTGCAACTGGACGACGGTGGAAG
TGTCGACTTTGTTCAAAGCTTGAAAAAAGCTGCTCGACCGCCTTGTTG
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