CN185702

Overview
NameCN185702
Unique NameCN185702
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2501 contig Csv1_Contig2501:1..766. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185702 vs. ExPASy Swiss-Prot
Match: ATL4I_ARATH (Putative RING-H2 finger protein ATL4I OS=Arabidopsis thaliana GN=ATL4I PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.120e-14
Identity = 52/146 (35.62%), Postives = 76/146 (52.05%), Query Frame = -3
Query:  324 LRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNKKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINDEQSNSDAQVLEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGVSVE-RYTLRFPDEVRKKLMTRG 758
            LRLL  C HVFH  CID+W  SH TCPVCR +L P    +    ++    ++   +   E S ++     D + +Q+ +       +   S +   +N      +PE+F RSHSTGHS+V      E +YTLR P+ V+ K +TRG
Sbjct:  123 LRLLTTCYHVFHQECIDLWFESHRTCPVCRRDLDPPPPPE----NTKPTVDEMIIDVIQETSDDEED---DHHRQQTTTQIDTWPSSGQTSSIKKEQN------LPEKFSRSHSTGHSIVRNKPEEEDKYTLRLPEHVKIK-VTRG 254          
BLAST of CN185702 vs. ExPASy Swiss-Prot
Match: ATL3A_ARATH (RING-H2 finger protein ATL3A OS=Arabidopsis thaliana GN=ATL3A PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.261e-14
Identity = 48/126 (38.10%), Postives = 66/126 (52.38%), Query Frame = -3
Query:  387 ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPESNKKVKLCDSNNESNQTHNNSASELSGEQSRAVIDINDEQSNSDAQVLEITNAASHVTPMRNRPPRLGMPERFPRSHSTGHSLVLAGV 764
            E+LRLLPKC+H FH  CID WL SH  CP+CRA +   S   V++ D  N+   T NNS S  +G+ S  V++++ E S S     E  N  S   P   +  R G   R    +S G  + +A +
Sbjct:  170 ESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSS--AVEIVDLTNQQIVTENNSIS--TGDDSVVVVNLDLENSRSRN---ETVNEGSTPKPPEMQDSRDGEERRSASLNSGGGVVSIADI 288          
BLAST of CN185702 vs. ExPASy Swiss-Prot
Match: ATL5C_ARATH (RING-H2 finger protein ATL5C OS=Arabidopsis thaliana GN=ATL5C PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.753e-11
Identity = 36/85 (42.35%), Postives = 44/85 (51.76%), Query Frame = -3
Query:  555 ETLRLLPKCDHVFHPHCIDVWLASHVTCPVCRANLTPES-------NKKVKLCDSNNESNQTHNN--------SASELSGEQSRA 764
            E LRLLPKC H FH  C+D WL +H TCP+CR  + PE        N   +L  S +ESN  +NN          S +SG  S A
Sbjct:  157 EVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSVNNNPPGLTRFIPVSRISGRHSSA 241          
The following BLAST results are available for this feature:
BLAST of CN185702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ATL4I_ARATH1.120e-1435.62Putative RING-H2 finger protein ATL4I OS=Arabidops... [more]
ATL3A_ARATH7.261e-1438.10RING-H2 finger protein ATL3A OS=Arabidopsis thalia... [more]
ATL5C_ARATH5.753e-1142.35RING-H2 finger protein ATL5C OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001L23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185702 ID=CN185702; Name=CN185702; organism=Citrus sinensis; type=EST; length=766bp
GAGGCCTGGGGCCTTGCCGAGGAGGATTCGCCACCTTGCCCAATCTTCAC
GTTAAGACAATTTAACGGCGATTTAACTGCTGTCAACAGGTTCCTTCCGT
TCGAATTCCAACCATCGCCCAATCCCATACCCTCACCACCAACTTTAACG
AACCCCATCTTCGAAACAAACGGCGGAGTCATTGAAAAAACCCAGCGGTC
GGACCGGCCAATTTGCCGGTCCACATAATTTCTTCCTCTACTACTCCCTT
CTCCTCCACCACCCTTTCTGGAACTGCCTTCCATTGCCAGAGCGGCATTG
AAACTCGCCGTTCGCTTAAGTTTACCTCTCGTCATTAGCTTTTTCCTAAC
CTCGTCTGGAAATCTTAGTGTGTACCTCTCAACGCTTACTCCAGCTAGAA
CAAGCGAATGTCCTGTCGAATGTGACCTCGGAAACCTCTCTGGCATTCCC
AATCTCGGCGGTCGGTTCCTCATCGGCGTCACGTGACTCGCCGCGTTAGT
AATTTCAAGCACTTGCGCGTCACTGTTGCTTTGCTCGTCGTTGATGTCGA
TCACAGCGCGACTTTGCTCTCCACTGAGTTCAGAAGCGGAGTTGTTGTGA
GTCTGATTCGACTCGTTGTTTGAATCGCATAATTTAACCTTTTTGTTTGA
TTCTGGAGTAAGGTTGGCCCTACAAACCGGGCACGTCACGTGAGAGGCTA
ACCAGACATCGATGCAATGAGGATGGAACACGTGATCACATTTTGGAAGT
AAACGCAGCGTTTCGT
back to top