CN185699

Overview
NameCN185699
Unique NameCN185699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = -2 
Query:  515 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 736
            DI+DPALLR GRLD+ I  P+P+EE+R +I +   RK  VS DV+   LA+ T  F+GA    +C  A   A+R
Sbjct:  339 DILDPALLRSGRLDRKIEFPMPNEEARARIMQIHSRKMNVSPDVNYEELARCTDDFNGAQSKAVCVEAGMIALR 412
[Close]
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: KTNA1_STRPU (Katanin p60 ATPase-containing subunit OS=Strongylocentrotus purpuratus GN=KATNA1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = -2 
Query:  503 IDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 730
            ID AL R  RL++ IYIPLP+ + R Q+ +  L++ P++ D+DL+++A+   G+SGADIT +C+ A   A+R  I+
Sbjct:  390 IDEALRR--RLEKRIYIPLPEIDGREQLLRINLKEVPLADDIDLKSIAEKMDGYSGADITNVCRDASMMAMRRRIQ 463
The following BLAST results are available for this feature:
BLAST of CN185699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
PRS6A_MOUSE9.182e-1147.3026S protease regulatory subunit 6A OS=Mus musculus... [more]
KTNA1_STRPU9.182e-1143.42Katanin p60 ATPase-containing subunit OS=Strongylo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001L22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185699 ID=CN185699; Name=CN185699; organism=Citrus sinensis; type=EST; length=737bp
ATCTTGCAGAGTTTCATTTCATCCATTATAATCAAAATAGACCATTGCGT
TCCAGCAGCCTAAACTCATTTAACCTTTTCGGCTTTATGGCAGAAACATT
GAAGCTTTTGACAAATCATATGGCGAATCGTCAAATACATATGTAAACCA
ACATCAGCATAAATTAGACAGCAAACTGATAGACTTTAAACGGGGGGAGG
ATCTAACTGTAAAGATCATCGTCATCTGCGCCACCTGCAGAAGACGCAAA
AGGATCTGATCCGCCATCAGCACCAGGGGGAGCAGCATCAGGAAACCTAA
ATTCACTTCCAAACCCTCTTGACTGCTGCAATGTTTGAGCAAATGCTTGG
TATTTGCGTATGTCAGCATCACTGACACTTCTACGAGCATACTTCATTGA
TTCCGCGGAGGGCACAGCTTTAATCTCAGCCACTTCATCCTCTACATCCT
CCTCCATTGCCTCTGGGTTCTCACTTCTCCTCCTCTCCCTCTCAATATCT
TTCTCGATATTCTCTCGGATGGCATATTTGCAAGCCCGCTGGCATATTTC
AGTAATATCTGCACCACTAAAGCCTTGGGTGTACTTAGCAAGAGCTCTGA
GGTCAACATCTTTGGACACCGGTGATTTCCTCAAGCAAGCCTTGAAAATT
TGAAGGCGAGATTCCTCATCAGGGAGAGGGATATAAATCAACTGGTCAAG
ACGGCCTGGACGGAGAAGGGCAGGATCTATGATATCT
back to top