CN185699

Overview
NameCN185699
Unique NameCN185699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 38/78 (48.72%), Postives = 52/78 (66.67%), Query Frame = -2
Query:  503 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 736
            DI+DPA+LRPGR D++I I +PDE+ RL+I K    K  + K+VDLR +AK  +   GAD+  +C  A  +AIRE  E
Sbjct:  298 DILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KNVDLREVAKLAENMVGADLKAVCTEAGMFAIREERE 374          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: FTSH_SHIFL (Cell division protease ftsH OS=Shigella flexneri GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  509 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 736
            D++DPALLRPGR D+ + + LPD   R QI K  +R+ P++ D+D   +A+ T GFSGAD+  +   A  +A R N
Sbjct:  301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: FTSH_SALTY (Cell division protease ftsH OS=Salmonella typhimurium GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  509 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 736
            D++DPALLRPGR D+ + + LPD   R QI K  +R+ P++ D+D   +A+ T GFSGAD+  +   A  +A R N
Sbjct:  301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: FTSH_SALTI (Cell division protease ftsH OS=Salmonella typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  509 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 736
            D++DPALLRPGR D+ + + LPD   R QI K  +R+ P++ D+D   +A+ T GFSGAD+  +   A  +A R N
Sbjct:  301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: FTSH_ECOLI (Cell division protease ftsH OS=Escherichia coli (strain K12) GN=ftsH PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  509 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 736
            D++DPALLRPGR D+ + + LPD   R QI K  +R+ P++ D+D   +A+ T GFSGAD+  +   A  +A R N
Sbjct:  301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: FTSH_ECO57 (Cell division protease ftsH OS=Escherichia coli O157:H7 GN=ftsH PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  509 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 736
            D++DPALLRPGR D+ + + LPD   R QI K  +R+ P++ D+D   +A+ T GFSGAD+  +   A  +A R N
Sbjct:  301 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN 376          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = -2
Query:  515 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIR 736
            DI+DPALLRPGR D+LI +PLP+ E R +IF+  L+K     ++    LA  T+GFSGA+I  +C  A   AIR
Sbjct:  284 DILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIR 357          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = -2
Query:  509 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 736
            D++DPA+LRPGR D+L+++P+P  E+R +I K    K  ++ D+D + LAK T+G SGAD+  I   A  +A+R++
Sbjct:  309 DVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKD 384          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 38/78 (48.72%), Postives = 51/78 (65.38%), Query Frame = -2
Query:  503 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIE 736
            DI+DPA+LRPGR D++I I +PDE+ RL+I K    K  + K VDLR +AK  +   GAD+  +C  A  +AIRE  E
Sbjct:  298 DILDPAILRPGRFDRIIEISMPDEDGRLEILKIHTEKMNL-KGVDLREVAKIAENMVGADLKAVCTEAGMFAIREERE 374          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.810e-13
Identity = 39/75 (52.00%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+DPALLRPGR D+LI +PLPD   RL+I K   RK  + ++VDL  +A  T+G SGAD+  I   A  +AIR+
Sbjct:  288 DILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNL-RNVDLSIIADITEGASGADLKAIATEAGMFAIRD 361          
The following BLAST results are available for this feature:
BLAST of CN185699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
PSMR_METM74.404e-1348.72Proteasome-activating nucleotidase OS=Methanococcu... [more]
FTSH_SHIFL4.404e-1344.74Cell division protease ftsH OS=Shigella flexneri G... [more]
FTSH_SALTY4.404e-1344.74Cell division protease ftsH OS=Salmonella typhimur... [more]
FTSH_SALTI4.404e-1344.74Cell division protease ftsH OS=Salmonella typhi GN... [more]
FTSH_ECOLI4.404e-1344.74Cell division protease ftsH OS=Escherichia coli (s... [more]
FTSH_ECO574.404e-1344.74Cell division protease ftsH OS=Escherichia coli O1... [more]
PSMR_SULTO5.751e-1350.00Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_METAC5.751e-1343.42Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METMP7.511e-1348.72Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_THEGJ9.810e-1352.00Proteasome-activating nucleotidase OS=Thermococcus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001L22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185699 ID=CN185699; Name=CN185699; organism=Citrus sinensis; type=EST; length=737bp
ATCTTGCAGAGTTTCATTTCATCCATTATAATCAAAATAGACCATTGCGT
TCCAGCAGCCTAAACTCATTTAACCTTTTCGGCTTTATGGCAGAAACATT
GAAGCTTTTGACAAATCATATGGCGAATCGTCAAATACATATGTAAACCA
ACATCAGCATAAATTAGACAGCAAACTGATAGACTTTAAACGGGGGGAGG
ATCTAACTGTAAAGATCATCGTCATCTGCGCCACCTGCAGAAGACGCAAA
AGGATCTGATCCGCCATCAGCACCAGGGGGAGCAGCATCAGGAAACCTAA
ATTCACTTCCAAACCCTCTTGACTGCTGCAATGTTTGAGCAAATGCTTGG
TATTTGCGTATGTCAGCATCACTGACACTTCTACGAGCATACTTCATTGA
TTCCGCGGAGGGCACAGCTTTAATCTCAGCCACTTCATCCTCTACATCCT
CCTCCATTGCCTCTGGGTTCTCACTTCTCCTCCTCTCCCTCTCAATATCT
TTCTCGATATTCTCTCGGATGGCATATTTGCAAGCCCGCTGGCATATTTC
AGTAATATCTGCACCACTAAAGCCTTGGGTGTACTTAGCAAGAGCTCTGA
GGTCAACATCTTTGGACACCGGTGATTTCCTCAAGCAAGCCTTGAAAATT
TGAAGGCGAGATTCCTCATCAGGGAGAGGGATATAAATCAACTGGTCAAG
ACGGCCTGGACGGAGAAGGGCAGGATCTATGATATCT
back to top