CN185699

Overview
NameCN185699
Unique NameCN185699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.673e-12
Identity = 36/84 (42.86%), Postives = 50/84 (59.52%), Query Frame = -2
Query:  485 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERE 736
            D++DPALLRPGRLD+ I IPLP+E  R+ + K          DVD  A+AK   GF+ AD+  +C  A  +AIR   +  +E +
Sbjct:  287 DVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEED 370          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = -2
Query:  479 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIERERR 736
            D +DPALLRPGRLD+ I  PLPD   +  +F+ C  K  +  +VDL          S A+IT ICQ A  +A+R+N    + KD E+  R
Sbjct:  310 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYR 399          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 40/87 (45.98%), Postives = 49/87 (56.32%), Query Frame = -2
Query:  488 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIER 736
            D +DPALLRPGRLD+ I  PLPD   +  IF     K  +S++VDL          SGADI  ICQ A   A+REN    + KD E+
Sbjct:  312 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDFEK 398          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = -2
Query:  488 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIER 736
            D +DPALLRPGRLD+ I  PLPD   +  +F     +  +S DVDL          SGADI  ICQ A   A+REN    + KD+E+
Sbjct:  311 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEK 397          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: FTSHB_ARATH (Cell division protease ftsH homolog 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = -2
Query:  500 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 736
            DI+DPAL RPGR D+ I +P PD   R +I +  L+  P+S+DVD++A+A+ T GF+GAD+  +   A   A  E  EK
Sbjct:  507 DILDPALTRPGRFDRHIVVPSPDVRGREEILELYLQGKPMSEDVDVKAIARGTPGFNGADLANLVNIAAIKAAVEGAEK 585          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: YB7A_SCHPO (Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = -2
Query:  335 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAK--YTQGFSGADITEICQRACKYAIRENIEKDIERERRRSENPXXXXXXXXXXXXEIKAVPSAESMKYARRSVSDADIRKYQAFAQ 736
            DIIDPA+LRPGRLD+ + + LPD   R++I K   +++P+ ++V+L  L +      FSGAD+  + + A   A+R  +  DI      + N              +       + K  + SVSD D +KYQ  A+
Sbjct:  639 DIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADLAALVREAAVTALRSAVFADI------ASNEPEITQHSALEPIRVTNADFELAFKNIKPSVSDRDRQKYQRLAK 768          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+D ALLRPGR+D+ I  P P+EE+RL I K   RK  +++ ++LR +A+   G SGA++  +C  A  YA+RE
Sbjct:  293 DILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 367          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+D ALLRPGR+D+ I  P P+EE+RL I K   RK  +++ ++LR +A+   G SGA++  +C  A  YA+RE
Sbjct:  299 DILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 373          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+D ALLRPGR+D+ I  P P+EE+RL I K   RK  +++ ++LR +A+   G SGA++  +C  A  YA+RE
Sbjct:  299 DILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 373          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+D ALLRPGR+D+ I  P P+EE+RL I K   RK  +++ ++LR +A+   G SGA++  +C  A  YA+RE
Sbjct:  299 DILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 373          
The following BLAST results are available for this feature:
BLAST of CN185699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
PRS10_DICDI1.673e-1242.8626S protease regulatory subunit S10B OS=Dictyostel... [more]
PRS6B_SOLTU2.185e-1242.2226S protease regulatory subunit 6B homolog OS=Sola... [more]
PRS6B_MANSE2.185e-1245.9826S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_CAEEL2.185e-1244.83Probable 26S protease regulatory subunit 6B OS=Cae... [more]
FTSHB_ARATH2.185e-1245.57Cell division protease ftsH homolog 11, chloroplas... [more]
YB7A_SCHPO2.854e-1232.35Uncharacterized AAA domain-containing protein C16E... [more]
PRS8_XENLA2.854e-1246.6726S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_RAT2.854e-1246.6726S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG2.854e-1246.6726S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE2.854e-1246.6726S protease regulatory subunit 8 OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185699 ID=CN185699; Name=CN185699; organism=Citrus sinensis; type=EST; length=737bp
ATCTTGCAGAGTTTCATTTCATCCATTATAATCAAAATAGACCATTGCGT
TCCAGCAGCCTAAACTCATTTAACCTTTTCGGCTTTATGGCAGAAACATT
GAAGCTTTTGACAAATCATATGGCGAATCGTCAAATACATATGTAAACCA
ACATCAGCATAAATTAGACAGCAAACTGATAGACTTTAAACGGGGGGAGG
ATCTAACTGTAAAGATCATCGTCATCTGCGCCACCTGCAGAAGACGCAAA
AGGATCTGATCCGCCATCAGCACCAGGGGGAGCAGCATCAGGAAACCTAA
ATTCACTTCCAAACCCTCTTGACTGCTGCAATGTTTGAGCAAATGCTTGG
TATTTGCGTATGTCAGCATCACTGACACTTCTACGAGCATACTTCATTGA
TTCCGCGGAGGGCACAGCTTTAATCTCAGCCACTTCATCCTCTACATCCT
CCTCCATTGCCTCTGGGTTCTCACTTCTCCTCCTCTCCCTCTCAATATCT
TTCTCGATATTCTCTCGGATGGCATATTTGCAAGCCCGCTGGCATATTTC
AGTAATATCTGCACCACTAAAGCCTTGGGTGTACTTAGCAAGAGCTCTGA
GGTCAACATCTTTGGACACCGGTGATTTCCTCAAGCAAGCCTTGAAAATT
TGAAGGCGAGATTCCTCATCAGGGAGAGGGATATAAATCAACTGGTCAAG
ACGGCCTGGACGGAGAAGGGCAGGATCTATGATATCT
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