CN185699

Overview
NameCN185699
Unique NameCN185699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9249 contig Csv1_Contig9249:509..1245. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+D ALLRPGR+D+ I  P P+EE+RL I K   RK  +++ ++LR +A+   G SGA++  +C  A  YA+RE
Sbjct:  299 DILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 373          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 35/75 (46.67%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+D ALLRPGR+D+ I  P P+EE+RL I K   RK  +++ ++LR +A+   G SGA++  +C  A  YA+RE
Sbjct:  299 DILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRE 373          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = -2
Query:  479 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIERERR 736
            D +DPALLRPGRLD+ I  PLPD   +  +F+ C  K  +S +VDL          S A+I  ICQ A  +A+R+N    + KD E+  R
Sbjct:  305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYR 394          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: FTSH_BUCBP (Cell division protease ftsH OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=ftsH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = -2
Query:  509 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN 736
            D++DPALLRPGR D+ I++ LPD   R +I +  ++K P+  +VD   +A+ T GFSGAD+  +   A  +A R N
Sbjct:  301 DVLDPALLRPGRFDRQIFVALPDIRGREKIIQVHMKKVPLGNNVDPMIIARGTPGFSGADLANLVNEAALFAARNN 376          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: FTSH9_ORYSJ (Cell division protease ftsH homolog 9, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH9 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = -2
Query:  500 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEK 736
            DI+DPAL RPGR D+ I +P PD   R +I +  L+  PVS DVD+ A+A+ T GF+GAD+  +   A   A  E  +K
Sbjct:  473 DILDPALTRPGRFDRHIVVPNPDVRGRQEILELYLQDKPVSSDVDVNAIARSTPGFNGADLANLVNIAAIKAAVEGADK 551          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 35/75 (46.67%), Postives = 49/75 (65.33%), Query Frame = -2
Query:  512 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIRE 736
            DI+DPALLR GR+D+ I  P P+E +RL+I K   RK  ++K +DL  +A    G SGA++  +C  A  YA+RE
Sbjct:  346 DILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTEAGMYALRE 420          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = -2
Query:  488 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIER 736
            D +DPALLRPGRLD+ I  PLPD   +  IF     K  +S++VDL          SGADI  ICQ +   A+REN    + KD E+
Sbjct:  315 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = -2
Query:  488 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIER 736
            D +DPALLRPGRLD+ I  PLPD   +  IF     K  +S++VDL          SGADI  ICQ +   A+REN    + KD E+
Sbjct:  315 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = -2
Query:  488 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIER 736
            D +DPALLRPGRLD+ I  PLPD   +  IF     K  +S++VDL          SGADI  ICQ +   A+REN    + KD E+
Sbjct:  315 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401          
BLAST of CN185699 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 39/87 (44.83%), Postives = 49/87 (56.32%), Query Frame = -2
Query:  488 DIIDPALLRPGRLDQLIYIPLPDEESRLQIFKACLRKSPVSKDVDLRALAKYTQGFSGADITEICQRACKYAIREN----IEKDIER 736
            D +DPALLRPGRLD+ I  PLPD   +  IF     K  +S++VDL          SGADI  ICQ +   A+REN    + KD E+
Sbjct:  315 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEK 401          
The following BLAST results are available for this feature:
BLAST of CN185699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 142
Match NameE-valueIdentityDescription
PRS8_HUMAN2.854e-1246.6726S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN2.854e-1246.6726S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PRS6B_ARATH2.854e-1242.2226S protease regulatory subunit 6B homolog OS=Arab... [more]
FTSH_BUCBP2.854e-1243.42Cell division protease ftsH OS=Buchnera aphidicola... [more]
FTSH9_ORYSJ2.854e-1245.57Cell division protease ftsH homolog 9, chloroplast... [more]
PRS8_ENCCU3.728e-1246.6726S protease regulatory subunit 8 homolog OS=Encep... [more]
PRS6B_RAT3.728e-1244.8326S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA3.728e-1244.8326S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN3.728e-1244.8326S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN3.728e-1244.8326S protease regulatory subunit 6B OS=Bos taurus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185699 ID=CN185699; Name=CN185699; organism=Citrus sinensis; type=EST; length=737bp
ATCTTGCAGAGTTTCATTTCATCCATTATAATCAAAATAGACCATTGCGT
TCCAGCAGCCTAAACTCATTTAACCTTTTCGGCTTTATGGCAGAAACATT
GAAGCTTTTGACAAATCATATGGCGAATCGTCAAATACATATGTAAACCA
ACATCAGCATAAATTAGACAGCAAACTGATAGACTTTAAACGGGGGGAGG
ATCTAACTGTAAAGATCATCGTCATCTGCGCCACCTGCAGAAGACGCAAA
AGGATCTGATCCGCCATCAGCACCAGGGGGAGCAGCATCAGGAAACCTAA
ATTCACTTCCAAACCCTCTTGACTGCTGCAATGTTTGAGCAAATGCTTGG
TATTTGCGTATGTCAGCATCACTGACACTTCTACGAGCATACTTCATTGA
TTCCGCGGAGGGCACAGCTTTAATCTCAGCCACTTCATCCTCTACATCCT
CCTCCATTGCCTCTGGGTTCTCACTTCTCCTCCTCTCCCTCTCAATATCT
TTCTCGATATTCTCTCGGATGGCATATTTGCAAGCCCGCTGGCATATTTC
AGTAATATCTGCACCACTAAAGCCTTGGGTGTACTTAGCAAGAGCTCTGA
GGTCAACATCTTTGGACACCGGTGATTTCCTCAAGCAAGCCTTGAAAATT
TGAAGGCGAGATTCCTCATCAGGGAGAGGGATATAAATCAACTGGTCAAG
ACGGCCTGGACGGAGAAGGGCAGGATCTATGATATCT
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