DC888009

Overview
NameDC888009
Unique NameDC888009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR2_MOUSE (Pyrroline-5-carboxylate reductase 2 OS=Mus musculus GN=Pycr2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.368e-25
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F+A++ALADGGV  G+PR LA+ L +Q +LGAA M+  S  HPGQLKD+V SPGG TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:  176 SGPAYAFMALDALADGGVKMGVPRRLAVRLGAQALLGAAKMLLDSEDHPGQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTREL 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR1_BOVIN (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Bos taurus GN=PYCR1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.092e-25
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HPGQLKD+V SPGG TI  +H LE  GFR +L+ AV A+  R+REL
Sbjct:  176 SGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPGQLKDNVCSPGGATIHALHVLESGGFRSLLIKAVEASCTRTREL 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR2_PONAB (Pyrroline-5-carboxylate reductase 2 OS=Pongo abelii GN=PYCR2 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.275e-25
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F+A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HP QLKD+V SPGG TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:  176 SGPAYAFMALDALADGGVKMGLPRRLAIQLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTREL 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR2_HUMAN (Pyrroline-5-carboxylate reductase 2 OS=Homo sapiens GN=PYCR2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.275e-25
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F+A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HP QLKD+V SPGG TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:  176 SGPAYAFMALDALADGGVKMGLPRRLAIQLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTREL 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR1_MOUSE (Pyrroline-5-carboxylate reductase 1, mitochondrial OS=Mus musculus GN=Pycr1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.275e-25
Identity = 56/93 (60.22%), Postives = 69/93 (74.19%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HP QLKD+V SPGG TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:  176 SGPAYAFTALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPSQLKDNVCSPGGATIHALHVLESGGFRSLLINAVEASCIRTREL 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR2_MACFA (Pyrroline-5-carboxylate reductase 2 OS=Macaca fascicularis GN=PYCR2 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.889e-25
Identity = 56/93 (60.22%), Postives = 70/93 (75.27%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY F+A++ALADGGV  GLPR LA+ L +Q +LGAA M+  S +HP QLKD+V SPGG TI  +H LE  GFR +L+NAV A+  R+REL
Sbjct:  176 SGPAYAFMALDALADGGVKMGLPRRLAVRLGAQALLGAAKMLLDSEQHPCQLKDNVCSPGGATIHALHFLESGGFRSLLINAVEASCIRTREL 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR3_DANRE (Pyrroline-5-carboxylate reductase 3 OS=Danio rerio GN=pycrl PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.538e-21
Identity = 50/93 (53.76%), Postives = 67/93 (72.04%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SG A++++  EALADG V  G+P  LA  +A+QT+LGA  ++  SGK P +LK +V +PGGTTI GIH LEK GFR   + AV AA++R+REL
Sbjct:  189 SGVAFVYVFAEALADGAVKMGMPSTLARRIAAQTILGAGVLLRDSGKLPAELKAEVCTPGGTTIHGIHALEKGGFRAAAIGAVEAASERAREL 281          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR3_XENLA (Pyrroline-5-carboxylate reductase 3 OS=Xenopus laevis GN=pycrl PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 7.882e-21
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SG AY++   EALADG V  G+P  LA  + +QT+LGA  M+ +S +HP  L+ DV +PGGTTI G+HELEK G R  +MNAV AA  R+ ++
Sbjct:  179 SGVAYVYTFAEALADGAVKMGMPSALARQIVAQTLLGAGKMLLQSEEHPASLRADVCTPGGTTIFGLHELEKGGLRAAVMNAVEAATTRAMDM 271          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR3_RAT (Pyrroline-5-carboxylate reductase 3 OS=Rattus norvegicus GN=Pycrl PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.756e-20
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SG A++    EALA+G +  G+P +LA  +A+QT+LG A M+ + GKHP QL+ DV +P GTTI G+H LE+ GFR   M+AV AA  R++ELS
Sbjct:  179 SGVAFVCTFSEALAEGAIKMGMPSDLAHRIAAQTLLGTAKMLQQEGKHPAQLRTDVLTPAGTTIHGLHALEQGGFRAAAMSAVEAATCRAKELS 272          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_SHIFL (Pyrroline-5-carboxylate reductase OS=Shigella flexneri GN=proC PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.995e-20
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            S PAY+F+ IEA+AD  V  G+PR  A   A+Q V+G+A MV ++G+HPG LKD V SPGGTTI  +  LE+ GFR  ++ A+    ++S +LS
Sbjct:  174 SSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLS 267          
The following BLAST results are available for this feature:
BLAST of DC888009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
P5CR2_MOUSE2.368e-2560.22Pyrroline-5-carboxylate reductase 2 OS=Mus musculu... [more]
P5CR1_BOVIN3.092e-2560.22Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR2_PONAB5.275e-2560.22Pyrroline-5-carboxylate reductase 2 OS=Pongo abeli... [more]
P5CR2_HUMAN5.275e-2560.22Pyrroline-5-carboxylate reductase 2 OS=Homo sapien... [more]
P5CR1_MOUSE5.275e-2560.22Pyrroline-5-carboxylate reductase 1, mitochondrial... [more]
P5CR2_MACFA6.889e-2560.22Pyrroline-5-carboxylate reductase 2 OS=Macaca fasc... [more]
P5CR3_DANRE3.538e-2153.76Pyrroline-5-carboxylate reductase 3 OS=Danio rerio... [more]
P5CR3_XENLA7.882e-2151.61Pyrroline-5-carboxylate reductase 3 OS=Xenopus lae... [more]
P5CR3_RAT1.756e-2051.06Pyrroline-5-carboxylate reductase 3 OS=Rattus norv... [more]
P5CR_SHIFL2.995e-2048.94Pyrroline-5-carboxylate reductase OS=Shigella flex... [more]

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Properties
Property NameValue
Genbank descriptionDC888009 EIC Citrus sinensis cDNA clone EIC1248 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC888009 ID=DC888009; Name=DC888009; organism=Citrus sinensis; type=EST; length=461bp
TATTANTTCNCTATTCATCAACGCCTGGAAGTACATTATTAGCATATAAG
CAACTTACCAATGCAGCTTCAAGCAACTGTTTACATCAATATAAATACAG
AAAACAAAAAAAAAAAGTTAAATCGCCATACTAGATGTATAAGAGCTGAG
AAACTGGAATCAAAATGAATTAGCTCTAGGACAGTTCTCGGCTTCGCTTA
GCAGCAGCAACAACAGCATTCATTAATATCCCGCGAAATCCACTTTTCTC
CAACTCATGAATACCGGCAATAGTAGTCCCACCAGGCGATGCAACATCAT
CTTTTAGCTGTCCAGGATGCTTCCCACTTTTAGTGACCATTGATGCTGCT
CCTAATACTGTCTGAGAAGCTAGACCAAGTGCAAGTTCTCGCGGTAGCCC
TGCAGCTACACCTCCATCAGCCAAAGCTTCAATTGCTAAAAATATATATG
CTGGACCGCTG
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