DC888009

Overview
NameDC888009
Unique NameDC888009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_ECOLI (Pyrroline-5-carboxylate reductase OS=Escherichia coli (strain K12) GN=proC PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.995e-20
Identity = 46/94 (48.94%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            S PAY+F+ IEA+AD  V  G+PR  A   A+Q V+G+A MV ++G+HPG LKD V SPGGTTI  +  LE+ GFR  ++ A+    ++S +LS
Sbjct:  174 SSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLS 267          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR3_MOUSE (Pyrroline-5-carboxylate reductase 3 OS=Mus musculus GN=Pycrl PE=2 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SG A++    EALA+G +  G+P  LA  +A+QT+LG A M+ + GKHP QL+ DV +P GTTI G+H LE+ GFR   M+AV AA  R++ELS
Sbjct:  179 SGVAFVCTFSEALAEGAIKMGMPSGLAHRIAAQTLLGTAKMLQQEGKHPAQLRTDVLTPAGTTIHGLHALERGGFRAATMSAVEAATCRAKELS 272          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR3_MACFA (Pyrroline-5-carboxylate reductase 3 OS=Macaca fascicularis GN=PYCRL PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.912e-20
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SG A++    EALA+G +  G+P  LA  +A+QT+LG A M+   G+HP QL+ DV +PGGTTI G+H LE+ G R   M+AV AA  R+RELS
Sbjct:  179 SGVAFVCAFSEALAEGAIKMGMPSSLAHRIAAQTLLGTAKMLLHEGQHPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRARELS 272          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR3_HUMAN (Pyrroline-5-carboxylate reductase 3 OS=Homo sapiens GN=PYCRL PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 6.672e-20
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SG A++    EALA+G V  G+P  LA  +A+QT+LG A M+   G+HP QL+ DV +PGGTTI G+H LE+ G R   M+AV AA  R++ELS
Sbjct:  179 SGVAFVCAFSEALAEGAVKMGMPSSLAHRIAAQTLLGTAKMLLHEGQHPAQLRSDVCTPGGTTIYGLHALEQGGLRAATMSAVEAATCRAKELS 272          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR3_BOVIN (Pyrroline-5-carboxylate reductase 3 OS=Bos taurus GN=PYCRL PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.941e-19
Identity = 47/94 (50.00%), Postives = 65/94 (69.15%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SG A++    EALA+G +  G+P  LA  +A+QT+LG A ++ + G+HP QL+ DV +PGGTTI G+H LE+ G R   M+AV AA  R+RELS
Sbjct:  181 SGVAFVCAFSEALAEGAIKMGMPSGLAHRIAAQTLLGTAKVLLQKGQHPAQLRTDVCTPGGTTIYGLHVLEQGGLRATAMSAVEAATCRARELS 274          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_CAEEL (Putative pyrroline-5-carboxylate reductase OS=Caenorhabditis elegans GN=F55G1.9 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 3.311e-19
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSG-------KHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            S PA+ F+ IE+LADG VA GL R  A  LA+Q VLGAA MV  S        +H G LKD V SPGGTTI G+  LEK+GFR  +M AVVAA+ ++ E++
Sbjct:  194 SSPAWTFMYIESLADGAVAQGLGRAEAKRLAAQAVLGAAQMVLNSNSGFDIETQHFGSLKDMVCSPGGTTIEGVRALEKNGFRYAVMEAVVAASTKADEMA 294          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_CORML (Pyrroline-5-carboxylate reductase OS=Corynebacterium melassecola GN=proC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.146e-18
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            S PAY+FL  EAL + GV  GLPR  A  LA  +  GAA+M+ ++GK P +L+  V+SP GTT+A I ELE+SG RG    A  A A RS EL
Sbjct:  175 SSPAYLFLVTEALIEAGVNLGLPRATAKKLAVASFEGAATMMKETGKEPSELRAGVSSPAGTTVAAIRELEESGIRGAFYRAAQACADRSEEL 267          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_CORGL (Pyrroline-5-carboxylate reductase OS=Corynebacterium glutamicum GN=proC PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.146e-18
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            S PAY+FL  EAL + GV  GLPR  A  LA  +  GAA+M+ ++GK P +L+  V+SP GTT+A I ELE+SG RG    A  A A RS EL
Sbjct:  175 SSPAYLFLVTEALIEAGVNLGLPRATAKKLAVASFEGAATMMKETGKEPSELRAGVSSPAGTTVAAIRELEESGIRGAFYRAAQACADRSEEL 267          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_THET2 (Pyrroline-5-carboxylate reductase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=proC PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 8.156e-18
Identity = 46/93 (49.46%), Postives = 58/93 (62.37%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            S PAY+ +  EALAD GV  G+PR LAL LA+  +     ++   G+HP Q+KD+VASPGGTTI G+H LE    R     AV AA +R  EL
Sbjct:  167 SAPAYLAVVAEALADAGVKMGMPRALALRLAADALAATGELL--KGRHPAQVKDEVASPGGTTIHGLHALEARAVRAAFYEAVEAATRRGHEL 257          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR1_BACSU (Pyrroline-5-carboxylate reductase 1 OS=Bacillus subtilis GN=proH PE=3 SV=5)

HSP 1 Score: 87.0409 bits (214), Expect = 4.048e-17
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SGPAY +  +E +   G  AGL ++L+  + +QT+LGAA M+ ++G+HP  L+D++ SP GTT AG+  L+KSG    +  A+  AAKRS+E+S
Sbjct:  189 SGPAYFYYLMEFIEKTGEEAGLDKQLSRSIGAQTLLGAAKMLMETGEHPEILRDNITSPNGTTAAGLQALKKSGGGEAISQAIKHAAKRSKEIS 282          
The following BLAST results are available for this feature:
BLAST of DC888009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
P5CR_ECOLI2.995e-2048.94Pyrroline-5-carboxylate reductase OS=Escherichia c... [more]
P5CR3_MOUSE3.912e-2051.06Pyrroline-5-carboxylate reductase 3 OS=Mus musculu... [more]
P5CR3_MACFA3.912e-2051.06Pyrroline-5-carboxylate reductase 3 OS=Macaca fasc... [more]
P5CR3_HUMAN6.672e-2051.06Pyrroline-5-carboxylate reductase 3 OS=Homo sapien... [more]
P5CR3_BOVIN1.941e-1950.00Pyrroline-5-carboxylate reductase 3 OS=Bos taurus ... [more]
P5CR_CAEEL3.311e-1953.47Putative pyrroline-5-carboxylate reductase OS=Caen... [more]
P5CR_CORML2.146e-1851.61Pyrroline-5-carboxylate reductase OS=Corynebacteri... [more]
P5CR_CORGL2.146e-1851.61Pyrroline-5-carboxylate reductase OS=Corynebacteri... [more]
P5CR_THET28.156e-1849.46Pyrroline-5-carboxylate reductase OS=Thermus therm... [more]
P5CR1_BACSU4.048e-1744.68Pyrroline-5-carboxylate reductase 1 OS=Bacillus su... [more]

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Properties
Property NameValue
Genbank descriptionDC888009 EIC Citrus sinensis cDNA clone EIC1248 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC888009 ID=DC888009; Name=DC888009; organism=Citrus sinensis; type=EST; length=461bp
TATTANTTCNCTATTCATCAACGCCTGGAAGTACATTATTAGCATATAAG
CAACTTACCAATGCAGCTTCAAGCAACTGTTTACATCAATATAAATACAG
AAAACAAAAAAAAAAAGTTAAATCGCCATACTAGATGTATAAGAGCTGAG
AAACTGGAATCAAAATGAATTAGCTCTAGGACAGTTCTCGGCTTCGCTTA
GCAGCAGCAACAACAGCATTCATTAATATCCCGCGAAATCCACTTTTCTC
CAACTCATGAATACCGGCAATAGTAGTCCCACCAGGCGATGCAACATCAT
CTTTTAGCTGTCCAGGATGCTTCCCACTTTTAGTGACCATTGATGCTGCT
CCTAATACTGTCTGAGAAGCTAGACCAAGTGCAAGTTCTCGCGGTAGCCC
TGCAGCTACACCTCCATCAGCCAAAGCTTCAATTGCTAAAAATATATATG
CTGGACCGCTG
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