DC888009

Overview
NameDC888009
Unique NameDC888009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_ZALAR (Pyrroline-5-carboxylate reductase OS=Zalerion arboricola GN=P5CR PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 9.970e-16
Identity = 46/93 (49.46%), Postives = 59/93 (63.44%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPA+  L +EA  DG VA GLPR  A  +A+QT+ GAA +V  SG+HP  LKD V +PGG TI G+  LE+ G RG +  AV  A   + +L
Sbjct:  217 SGPAFFALILEAAIDGAVAMGLPRAEAQRMAAQTMKGAAGLVL-SGEHPALLKDKVTTPGGCTIGGLMVLEEGGVRGTVARAVREATVVASQL 308          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_PSEAE (Pyrroline-5-carboxylate reductase OS=Pseudomonas aeruginosa GN=proC PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.789e-15
Identity = 43/94 (45.74%), Postives = 56/94 (59.57%), Query Frame = -2
Query:  179 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSRELS 460
            SGPAY FL ++A+ D G   GL RE A  L  QT LGAA M   S   P +L+  V SP GTT A I   + +GF  ++  A+ AA++RS EL+
Sbjct:  175 SGPAYFFLLMQAMTDAGEKLGLSRETASRLTLQTALGAAQMALSSEVEPAELRRRVTSPNGTTEAAIKSFQANGFEALVEQALNAASQRSAELA 268          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_MYCLE (Pyrroline-5-carboxylate reductase OS=Mycobacterium leprae GN=proC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.440e-15
Identity = 47/110 (42.73%), Postives = 64/110 (58.18%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK---SGKH--------------PGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY FL +EAL D GVA GL R++A  LA+QT+ G+A+M+ +     +H                QL+  + SPGGTT A + ELE+ G R ++  AV AA  RS +L
Sbjct:  180 SGPAYFFLLVEALVDAGVAVGLTRQVATELAAQTMAGSAAMLLERMDQDRHSAEVAPLGAQVDVPAAQLRATITSPGGTTAAALRELERGGLRMVVDAAVQAAKIRSEQL 289          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR2_BACSU (Pyrroline-5-carboxylate reductase 2 OS=Bacillus subtilis GN=proI PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 8.440e-15
Identity = 39/93 (41.94%), Postives = 57/93 (61.29%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY++  IEA+       GL +E A  L  QT+ GA  M+ +SGK P +L+ ++ SPGGTT AG+  L+ S F   +++ +   AKRS E+
Sbjct:  173 SGPAYVYRYIEAMEKAAQKVGLDKETAKALILQTMAGATDMLLQSGKQPEKLRKEITSPGGTTEAGLRALQDSRFEEAIIHCIEETAKRSAEI 265          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_MYCTU (Pyrroline-5-carboxylate reductase OS=Mycobacterium tuberculosis GN=proC PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.102e-14
Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTK---------SGKHPG--------QLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPAY FL +EAL D GV  GL R++A  LA+QT+ G+A+M+ +         +G+  G        +L+  V SPGGTT A + ELE+ GFR  +  AV AA  RS +L
Sbjct:  181 SGPAYFFLLVEALVDAGVGVGLSRQVATDLAAQTMAGSAAMLLERMEQDQGGANGELMGLRVDLTASRLRAAVTSPGGTTAAALRELERGGFRMAVDAAVQAAKSRSEQL 290          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_TREPA (Pyrroline-5-carboxylate reductase OS=Treponema pallidum GN=proC PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.189e-14
Identity = 42/88 (47.73%), Postives = 55/88 (62.50%), Query Frame = -2
Query:  191 PAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRS 454
            PA+    IEALAD GV  GL R+ A  LA+  + G A+++  SG HP QLKD V SP G+TI G+  LE+ G R  +++AV AA   S
Sbjct:  176 PAFAAQFIEALADAGVRYGLARDQAYRLAAHMLEGTAALIQHSGVHPAQLKDRVCSPAGSTIRGVLALEEQGLRRAVIHAVRAALSSS 263          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_YEAST (Pyrroline-5-carboxylate reductase OS=Saccharomyces cerevisiae GN=PRO3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.145e-14
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPA++ L +E+L + G+  G+P + +   A + + G   MV KSG HP  LK  V +PGGTTIAG+  +E+ G +  ++N V  AA+ + +L
Sbjct:  189 SGPAFVLLMLESLMESGLKLGIPLQESKECAMKVLEGTVKMVEKSGAHPSVLKHQVCTPGGTTIAGLCVMEEKGVKSGIINGVEEAARVASQL 281          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_AQUAE (Pyrroline-5-carboxylate reductase OS=Aquifex aeolicus GN=proC PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.145e-14
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPA++F  I+ALA  GV  G   E AL +A  TV+G+A ++ +   +P +L   V SPGGTTI GI  LE+ GF+G +M  +   ++++++L
Sbjct:  173 SGPAFVFSFIDALALAGVHQGFSYEQALRIALDTVMGSAKLLKEFQVNPNELIAKVTSPGGTTIEGIKYLEEKGFKGTVMECINRTSQKAKKL 265          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_NEUCR (Pyrroline-5-carboxylate reductase OS=Neurospora crassa GN=pro-1 PE=3 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 9.332e-14
Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = -2
Query:  212 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAV 460
            SG A+  L +EA ADGGVA GLPR  A  +A+QT+ GAA +V + G+HP  L++ V++PGG TI G+  LE+ G R  +  AV
Sbjct:  228 SGTAFFALMMEAAADGGVAMGLPRAEANRMAAQTMRGAAGLVLE-GEHPAILREKVSTPGGCTIGGLLVLEEGGVRAAVARAV 309          
BLAST of DC888009 vs. ExPASy Swiss-Prot
Match: P5CR_SCHPO (Pyrroline-5-carboxylate reductase OS=Schizosaccharomyces pombe GN=pro3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.032e-12
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = -2
Query:  182 SGPAYIFLAIEALADGGVAAGLPRELALGLASQTVLGAASMVTKSGKHPGQLKDDVASPGGTTIAGIHELEKSGFRGILMNAVVAAAKRSREL 460
            SGPA++   IEA+ DGGV  G+P   A  LA+QT++G   MV + G+HP  +++DV++P G TI+G+  LE    R  +   +  A K +  L
Sbjct:  189 SGPAFVATMIEAMTDGGVMMGIPFPQAQELAAQTMVGTGRMVLQ-GQHPAMIRNDVSTPAGCTISGLLALEDGKIRSTIARGIEQATKTASGL 280          
The following BLAST results are available for this feature:
BLAST of DC888009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
P5CR_ZALAR9.970e-1649.46Pyrroline-5-carboxylate reductase OS=Zalerion arbo... [more]
P5CR_PSEAE3.789e-1545.74Pyrroline-5-carboxylate reductase OS=Pseudomonas a... [more]
P5CR_MYCLE8.440e-1542.73Pyrroline-5-carboxylate reductase OS=Mycobacterium... [more]
P5CR2_BACSU8.440e-1541.94Pyrroline-5-carboxylate reductase 2 OS=Bacillus su... [more]
P5CR_MYCTU1.102e-1443.64Pyrroline-5-carboxylate reductase OS=Mycobacterium... [more]
P5CR_TREPA4.189e-1447.73Pyrroline-5-carboxylate reductase OS=Treponema pal... [more]
P5CR_YEAST7.145e-1439.78Pyrroline-5-carboxylate reductase OS=Saccharomyces... [more]
P5CR_AQUAE7.145e-1441.94Pyrroline-5-carboxylate reductase OS=Aquifex aeoli... [more]
P5CR_NEUCR9.332e-1449.40Pyrroline-5-carboxylate reductase OS=Neurospora cr... [more]
P5CR_SCHPO1.032e-1239.78Pyrroline-5-carboxylate reductase OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionDC888009 EIC Citrus sinensis cDNA clone EIC1248 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC888009 ID=DC888009; Name=DC888009; organism=Citrus sinensis; type=EST; length=461bp
TATTANTTCNCTATTCATCAACGCCTGGAAGTACATTATTAGCATATAAG
CAACTTACCAATGCAGCTTCAAGCAACTGTTTACATCAATATAAATACAG
AAAACAAAAAAAAAAAGTTAAATCGCCATACTAGATGTATAAGAGCTGAG
AAACTGGAATCAAAATGAATTAGCTCTAGGACAGTTCTCGGCTTCGCTTA
GCAGCAGCAACAACAGCATTCATTAATATCCCGCGAAATCCACTTTTCTC
CAACTCATGAATACCGGCAATAGTAGTCCCACCAGGCGATGCAACATCAT
CTTTTAGCTGTCCAGGATGCTTCCCACTTTTAGTGACCATTGATGCTGCT
CCTAATACTGTCTGAGAAGCTAGACCAAGTGCAAGTTCTCGCGGTAGCCC
TGCAGCTACACCTCCATCAGCCAAAGCTTCAATTGCTAAAAATATATATG
CTGGACCGCTG
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