CN185690

Overview
NameCN185690
Unique NameCN185690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12765 contig Csv1_Contig12765:168..1026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185690 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.812e-11
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  240 KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRIH 542
            KE  + +  + D+PG+ K++VK+ + DG VL I G             H   RS G +     LP++AK D++KA ++NGVL + +P+ E PK  VK + ++
Sbjct:   60 KETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPKNEAPKPQVKAINVY 161          
BLAST of CN185690 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.273e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  243 KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 542
            KE  + +  + D+PG+ K++VK+ + DG VL + G             H   RS G +     LP+DAK +E+KA L+NGVL + +P+ E  K +VK + I
Sbjct:   49 KETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEI 149          
BLAST of CN185690 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 6.886e-11
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  243 KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 542
            KE  + +  + DVPGL K++VK+ + DG VL I G             H   RS G +     LP++ K ++IKA ++NGVL + +P+ E  K DVK ++I
Sbjct:   52 KETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQI 152          
BLAST of CN185690 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 35/101 (34.65%), Postives = 58/101 (57.43%), Query Frame = -3
Query:  243 KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 542
            +E  + +  + DVPGL K++VK+ + DG +L I G             H   RS G +     LP++AK +E+KA ++NGVL++ +P+ ++ K +VK V I
Sbjct:   54 RETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDI 154          
BLAST of CN185690 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = -3
Query:  243 KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 542
            KE  + +  + D+PGL K++VK+ I D  VL I G             H   RS G +     LP++AK +E+KA ++NGVL + +P+ E  K DVK + I
Sbjct:   52 KETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTVPKEEVKKPDVKAIEI 152          
BLAST of CN185690 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 36/101 (35.64%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  243 KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 542
            KE  + +  + DVPGL K++VK+ + DG VL I G             H   RS G +     LP++ K ++IKA ++NGVL + +P+ E  K DVK +++
Sbjct:   59 KETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQV 159          
BLAST of CN185690 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 8.994e-11
Identity = 44/138 (31.88%), Postives = 70/138 (50.72%), Query Frame = -3
Query:  243 FPSGLGNALMQATENINRIFENLNFTPSQLMG-RV--KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 644
            FP G G +    + +   +F   N   +   G R+  KE  + +  + DVPGL K++VK+ + DG +L I G             H   RS G +     LP++ K ++IKA ++NGVL + +P+ E  K DVK ++I
Sbjct:   24 FPFGSGGS----SSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQI 157          
The following BLAST results are available for this feature:
BLAST of CN185690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
HSP11_CHERU1.812e-1134.3118.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS16A_WHEAT5.273e-1135.6416.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS174_ORYSJ6.886e-1136.6317.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP17_ARATH8.994e-1134.6517.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP14_SOYBN8.994e-1136.6317.5 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ORYSJ8.994e-1135.6418.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS177_ORYSJ8.994e-1131.8817.7 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185690 ID=CN185690; Name=CN185690; organism=Citrus sinensis; type=EST; length=859bp
TTGATTCTCTTAATTCAATGGATTCTGAGTTTTTGATACAACTCCAACAA
ATAAACATATTTATTACAAACTTGGAAACAAAGATGCTTCTGAAACTCAG
TAGGATCTTTCAGAAATTAAACACAAAGTTAATTATCTTTTAATCACAAA
GCAAAGTTACATAACTTATTTCCATTTCAAAACCAACCCAAAACCCTCCA
CAAAAACATCACAGACCATGCATAAACGCCACTTCACTAATGGATTCTCA
CTTCCTTCACATCCTGCTTAGGCTTTTCGGTCCTAGGAATTACAATATTA
AGAACCCCGTTTTTCAACTCGGCCTTAATCTCGTCAGCCTTCGCATCATC
AGGCAGCGCGAGGCTTGTGTTGTAGTAACCATAGCTCCTTGCTGACCAGT
GTTCGTCGTCAGAGCTTTCCTCTTCCTCTTCCTTGTGCTCACCCTTTATT
GTCAGAACCCCATCATGAATGGTGATCTTCACATCATCTTTGCCTAGGCC
CGGAACGTCATACCGCAGCTTGTAGCAGTCGTCTTGCTCTTTCACCCGCC
CCATGAGTTGTGATGGTGTGAAGTTCAAGTTTTCGAATATCCTGTTAATG
TTTTCGGTTGCTTGCATGAGTGCATTTCCAAGCCCTGAAGGAAAGAACTC
AGCAAGTACGGGAATGTCATTGTTCCTCCAAAGACTCCCCCTCCTGCCTC
TTCTCCTTGGAAAGAGCCTTGATCTTTTTTCAGTCACGGCGACTTCTCTG
TCTTGTTTTTTCTCATCATTGGCAGCTGTTGCCATGAACCTCTTCAACAA
CTCATTACTCCACTTTTGCCTTTGTACACCACCGATGGTACTAGCACTTC
TCTCACCAA
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