CN185677

Overview
NameCN185677
Unique NameCN185677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE1_BACCR (Spermidine synthase 1 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=speE1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.417e-15
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = -1
Query:  201 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFL 602
            +YD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++      LI  +    +E F  +  Y  A++PTYPSG+  F I S +          +P+E +E    H+ E ++Y  E+H+AAFALP F+
Sbjct:  148 EYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTVFKDVKEIFPITRLYT-ANIPTYPSGLWTFTIGSKKH---------DPLEVIE-ERFHEIETKYYTKELHNAAFALPKFV 270          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_BACCN (Spermidine synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=speE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.098e-14
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = -1
Query:  201 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFL 602
            +YD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++      LI +++   +E F  +  Y  A++PTYPSG+  F I S +          +P+E  E    H  E ++Y  E+H A+FALP F+
Sbjct:  148 EYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITNVVKDVKEIFPITRLYT-ANIPTYPSGLWTFTIGSKK---------YDPLEVSEDR-FHDIETKYYTKELHKASFALPKFV 270          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_BACWK (Spermidine synthase OS=Bacillus weihenstephanensis (strain KBAB4) GN=speE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.740e-14
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = -1
Query:  201 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFL 602
            +YD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++      LI  +    +E F  +  Y  A++PTYPSG+  F I S +          +P+E  E    H+ E ++Y  E+H+AAFALP F+
Sbjct:  148 EYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTVFKDVKEIFPITRLYT-ANIPTYPSGLWTFTIGSKKH---------DPLEVSE-ERFHEIETKYYTKELHNAAFALPKFV 270          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_BACC1 (Spermidine synthase OS=Bacillus cereus (strain ATCC 10987) GN=speE PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.740e-14
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = -1
Query:  201 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFL 602
            +YD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++      LI  +    +E F  +  Y  A++PTYPSG+  F I S +          +P+E  E    H+ E ++Y  E+H+AAFALP F+
Sbjct:  148 EYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTVFKDVKEIFPITRLYT-ANIPTYPSGLWTFTIGSKKH---------DPLEVSE-ERFHEIETKYYTKELHNAAFALPKFV 270          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE1_BACAN (Spermidine synthase 1 OS=Bacillus anthracis GN=speE1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.740e-14
Identity = 49/134 (36.57%), Postives = 74/134 (55.22%), Query Frame = -1
Query:  201 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFL 602
            +YD I+VDS++PVGPA  L  K F+  I+KAL+  G+     ++      LI  +    +E F  +  Y  A++PTYPSG+  F I S +          +P+E  E    H+ E ++Y  E+H+AAFALP F+
Sbjct:  148 EYDVIMVDSTEPVGPAVNLFTKGFYAGISKALKEDGIFVAQTDNPWFTPELITTVFKDVKEIFPITRLYT-ANIPTYPSGLWTFTIGSKKH---------DPLEVSE-ERFHEIETKYYTKELHNAAFALPKFV 270          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_METJA (Probable spermidine synthase OS=Methanocaldococcus jannaschii GN=speE PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.360e-13
Identity = 51/143 (35.66%), Postives = 73/143 (51.05%), Query Frame = -1
Query:  189 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRET-FKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKH---KRELRFYNSEIHSAAF-ALPAFLKREV 602
            KYD IIVD  DPVGPA+ L EK F+  + K L   G++   +ES   +  LI+++    ++  FK  + Y +  +PTYPSG   F + S +          NP+E  E   K      E ++Y+ E+H   F A P FLK  V
Sbjct:  156 KYDVIIVDCPDPVGPAKGLFEKEFYKNVFKCLNDDGIMVQQSESPLYNLDLIQNICRYLKDAGFKIIMPYTY-PMPTYPSGFWSFTLASKK---------YNPLEVDEARIKEALKDMETKYYDEEVHKGIFLAAPKFLKDAV 288          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_SYNPX (Spermidine synthase OS=Synechococcus sp. (strain WH8102) GN=speE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.151e-12
Identity = 44/138 (31.88%), Postives = 65/138 (47.10%), Query Frame = -1
Query:  186 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKREVS 599
            YD ++VD SDP GPA+ L  + FF+   + L+PGGV    +ES      +   M+ + RE F G     +  VP YPSG   +   + +GP    V P       EG +      +        A  A+PAF+ RE++
Sbjct:  149 YDVVLVDGSDPAGPAEGLFNRAFFEHCRRILKPGGVFATQSESPEAFREVHVAMVRLLREVF-GHADPLYGWVPMYPSGWWSWTFAAVDGPRYRTVQPARAALVAEGCEIWSPRWQ------QGALDAVPAFIARELA 279          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_BACSU (Spermidine synthase OS=Bacillus subtilis GN=speE PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.151e-12
Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = -1
Query:  201 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFL 602
            +YD I+VDS++PVGPA  L  K F+  IAKAL+  G+     ++      LI ++    +E F  +  Y  A++PTYPSG+  F I S +       +P+     +E +     E ++Y  +IH AAF LP F+
Sbjct:  149 QYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYT-ANIPTYPSGLWTFTIGSKK------YDPL----AVEDSRFFDIETKYYTKDIHKAAFVLPKFV 271          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_HALHL (Spermidine synthase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=speE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.504e-12
Identity = 47/134 (35.07%), Postives = 66/134 (49.25%), Query Frame = -1
Query:  198 DAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLH-THLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 596
            D +IVDS+DPVGPA  L  K F   +  AL PGG++   +ES  LH   +I  +     E     VH     VP+YPSG     +    G   +F        +   +++   E R+YN++IH AA A+P  LK
Sbjct:  153 DVVIVDSTDPVGPAAGLFTKEFLTDVRSALGPGGIVVQQSESPLLHRDSVIAPLHRAASEAGFDGVHTLTFPVPSYPSGWWSATLMVNGGDPRNF--------READSEEKPFETRYYNADIHRAALAVPELLK 278          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_CALS8 (Spermidine synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=speE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 44/135 (32.59%), Postives = 71/135 (52.59%), Query Frame = -1
Query:  195 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLKR 599
            +D IIVDS+DPVGPA  L E  F+  + + L+  G+     ES      LI ++    +  F  +  Y    +PTYPSG+  F + S +          +P+E ++ +   + + R+YN E+H A FALP F+++
Sbjct:  152 FDVIIVDSTDPVGPAVGLFESNFYQAVYECLKEDGLFVAQTESPFYDQDLIRNVFHSIKSIFPITRLYL-GFIPTYPSGLWSFTMGSKK---------YDPLE-IDTSKIKRIDTRYYNPELHKALFALPTFVQK 275          
The following BLAST results are available for this feature:
BLAST of CN185677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
SPEE1_BACCR9.417e-1536.57Spermidine synthase 1 OS=Bacillus cereus (strain A... [more]
SPEE_BACCN2.098e-1435.82Spermidine synthase OS=Bacillus cereus subsp. cyto... [more]
SPEE_BACWK2.740e-1436.57Spermidine synthase OS=Bacillus weihenstephanensis... [more]
SPEE_BACC12.740e-1436.57Spermidine synthase OS=Bacillus cereus (strain ATC... [more]
SPEE1_BACAN2.740e-1436.57Spermidine synthase 1 OS=Bacillus anthracis GN=spe... [more]
SPEE_METJA1.360e-1335.66Probable spermidine synthase OS=Methanocaldococcus... [more]
SPEE_SYNPX1.151e-1231.88Spermidine synthase OS=Synechococcus sp. (strain W... [more]
SPEE_BACSU1.151e-1235.07Spermidine synthase OS=Bacillus subtilis GN=speE P... [more]
SPEE_HALHL1.504e-1235.07Spermidine synthase OS=Halorhodospira halophila (s... [more]
SPEE_CALS81.964e-1232.59Spermidine synthase OS=Caldicellulosiruptor saccha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185677 ID=CN185677; Name=CN185677; organism=Citrus sinensis; type=EST; length=602bp
TTTTTTTTTTTTTTTTTAAGGTCAAGGTCAAGGCGTAACCCCTGGTCTAC
ATATATCATAATCACCCTATAAACTATAACACGCGGAAGCAGTAAATCTC
GCTCGTCAAGAAATCATGTGACGATTGGTATGAATCATTAGGAGACGCAT
ATTCCTTGACTTGGAGTTGGAGAATCACCAAGTACGCTCACCTCCCTCTT
CAAAAATGCAGGCAATGCAAAGGCAGCTGAGTGAATCTCCGAGTTATAGA
ACCTTAGTTCTCTTTTATGCTTGTCAGCTCCCTCCAACTTCTCAATAGGA
TTAATGGGGTTCACAAAATCAACATGAGGTCCCTCTGTTGAGCATATCAG
AAACCCAATGATACCACTTGGGTATGTTGGGACACTTGCCCAAGCATAAT
GTACAGAACCCTTAAATGTTTCACGACAAATAGAAATCATGTCCTCAATA
AGGTGAGTATGAAGCCCCATACTTTCTGCCATGTTACAGAGGACACCTCC
AGGCCTTAATGCTTTAGCAATTGTGTCAAAAAATGGCTTCTCTACAAGCT
CTTGAGCAGGACCTACAGGGTCTGATGAATCAACAATAATTGCATCATAT
TT
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