CN185677

Overview
NameCN185677
Unique NameCN185677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10250 contig Csv1_Contig10250:60..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_ALKMQ (Spermidine synthase OS=Alkaliphilus metalliredigens (strain QYMF) GN=speE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = -1
Query:  189 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFK--GSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKREL--RFYNSEIHSAAFALPAFLKREV 602
            KYD II+DS+DPVGP + L  + F+    KAL   G+L N  ES  ++     + I    +  K    V    A +PTYPSG   F   S           ++P++ L+ +  ++  L  ++YN+++H  AFALP+++K ++
Sbjct:  148 KYDLIIIDSTDPVGPGEGLFSQEFYTNCFKALTEQGILVNQNES-PVYEQFAREAIRANSKLKKIFPIVEVYQAQIPTYPSGYWLFGFAS---------KSLHPVKDLKSSVWNQLNLNTKYYNTQLHVGAFALPSYVKEQI 279          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_PROM3 (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=speE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 46/139 (33.09%), Postives = 68/139 (48.92%), Query Frame = -1
Query:  186 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAF-ALPAFLKREVS 599
            YD I+VD SDP GPA+ L  + FF    + LRPGGV    +ES      +  D + + R+ F G     +  VP YPSG   +   + +GP        NP+     A     E+  ++      AF A+PAF++RE++
Sbjct:  156 YDVILVDGSDPTGPAEGLFNEAFFKQCRRILRPGGVFATQSESPEAFRQIHIDTVRLIRQVF-GYADPLYGWVPMYPSGWWSWTFAAVDGPRYR-----NPLPARAAAISSGCEI--WSPRWQQGAFEAIPAFIERELT 286          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE1_THETN (Spermidine synthase 1 OS=Thermoanaerobacter tengcongensis GN=speE1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 45/137 (32.85%), Postives = 72/137 (52.55%), Query Frame = -1
Query:  198 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICST--EGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 602
            ++D +IVDS+DP+GPA  L    F+  + + LR  G++    ES  ++  LI  +  + +E +  +  Y  A+VPTYP  +  F + S   +   VD    IN I ++        + ++Y  EIH AAF LP F+K
Sbjct:  148 EFDVVIVDSTDPIGPAVGLFTSDFYRAVYECLREDGIIVAQTESPFIYGKLINKISKMFKEIYPITKAYI-ATVPTYPGSLWTFTMGSKKYDPEEVD----INSIPRI--------QTKYYTPEIHKAAFVLPKFVK 271          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_MOOTA (Spermidine synthase OS=Moorella thermoacetica (strain ATCC 39073) GN=speE PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.462e-12
Identity = 46/134 (34.33%), Postives = 69/134 (51.49%), Query Frame = -1
Query:  198 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 599
            YD IIVDS+DP+GPA  L    F+  + +AL+  GV     ES   ++ LI  +    +E F  +  Y   +VPTYP G+  F + S +          +P+E ++     K   R+Y   IH AAF+LP F++
Sbjct:  150 YDVIIVDSTDPIGPAVGLFSAEFYRNVYRALKADGVFVAQTESPIFNSRLIRRIQRDLKEIFPIARLYL-TTVPTYPGGLWAFSLGSKK---------YDPLE-VDWRQAPKVATRYYTPAIHQAAFSLPPFVQ 272          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_THEPX (Spermidine synthase OS=Thermoanaerobacter sp. (strain X514) GN=speE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = -1
Query:  198 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICST--EGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 602
            ++D +IVDS+DP+GPA  L    F+  + + L+  G++    ES  ++  LI  +  + +E +  +  Y  A++PTYP  +  F + S   +   VD    IN I ++        + ++Y  EIH AAF LP F+K
Sbjct:  148 EFDVVIVDSTDPIGPAVGLFTSDFYKAVYECLKEDGIIVAQTESPFIYGKLINKLSKMFKEIYPITKAYI-ATIPTYPGSLWTFTMGSKKYDPEEVD----INSIPRI--------DTKYYTPEIHKAAFVLPKFVK 271          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_THEP3 (Spermidine synthase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=speE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 43/137 (31.39%), Postives = 72/137 (52.55%), Query Frame = -1
Query:  198 KYDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICST--EGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 602
            ++D +IVDS+DP+GPA  L    F+  + + L+  G++    ES  ++  LI  +  + +E +  +  Y  A++PTYP  +  F + S   +   VD    IN I ++        + ++Y  EIH AAF LP F+K
Sbjct:  148 EFDVVIVDSTDPIGPAVGLFTSDFYKAVYECLKEDGIIVAQTESPFIYGKLINKLSKMFKEIYPITKAYI-ATIPTYPGSLWTFTMGSKKYDPEEVD----INSIPRI--------DTKYYTPEIHKAAFVLPKFVK 271          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_SYNS3 (Spermidine synthase OS=Synechococcus sp. (strain CC9311) GN=speE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 43/139 (30.94%), Postives = 65/139 (46.76%), Query Frame = -1
Query:  186 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAF-ALPAFLKREVS 599
            YD ++VD SDP GPA+ L  + FF    + L+PGGV    +ES      +  DM+ + RE F G     +  VP YPSG   +   + + P    V         EG+         ++      AF  +PAF++RE++
Sbjct:  156 YDVVLVDGSDPTGPAEGLFNRAFFSNCCRILKPGGVFATQSESPEAFRQVHIDMVKLIRELF-GHADPLYGWVPMYPSGWWSWTFAAKDAPRYLTVQSERAAAVAEGS-------AIWSPRWQQGAFNTIPAFIERELN 286          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_PROMM (Spermidine synthase OS=Prochlorococcus marinus (strain MIT 9313) GN=speE PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 45/139 (32.37%), Postives = 69/139 (49.64%), Query Frame = -1
Query:  186 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAF-ALPAFLKREVS 599
            YD I++D SDP GPA+ L  + FF+   + LRPGGV    +ES      +  D + + R+ F G     +  VP YPSG   +   + +GP        NP+     A     E+  ++      AF A+PAF++RE++
Sbjct:  156 YDVILIDGSDPAGPAEGLFNQTFFEHCRRILRPGGVFATQSESPEAFRQVHIDTVRLIRQVF-GYADPLYGWVPMYPSGWWSWTFAAIDGPRYR-----NPLPARAAAISAGCEI--WSPRWQQGAFEAIPAFIERELT 286          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_ANATD (Spermidine synthase OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=speE PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.171e-11
Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = -1
Query:  198 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYAWASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAFALPAFLK 599
            +D IIVDS+DPVGPA  L +  F+  + + L+  G+     ES      LI+++    +  F  +  Y    +PTYPSG+  F + S +          +P+E ++ +   + + ++YN E+H A FALP F++
Sbjct:  152 FDVIIVDSTDPVGPAVGLFQDSFYKAVFECLKEDGLFVAQTESPFYDQDLIKNVFHAVKSIFPITRLYL-GFIPTYPSGLWSFTLGSKK---------YDPLE-VDVSRIKRIDTKYYNPELHKALFALPTFVQ 274          
BLAST of CN185677 vs. ExPASy Swiss-Prot
Match: SPEE_PROM1 (Spermidine synthase OS=Prochlorococcus marinus (strain NATL1A) GN=speE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.317e-11
Identity = 44/142 (30.99%), Postives = 70/142 (49.30%), Query Frame = -1
Query:  186 YDAIIVDSSDPVGPAQELVEKPFFDTIAKALRPGGVLCNMAESMGLHTHLIEDMISICRETFKGSVHYA---WASVPTYPSGIIGFLICSTEGPHVDFVNPINPIEKLEGADKHKRELRFYNSEIHSAAF-ALPAFLKREVS 599
            YD II+D +DP+GP++EL    F     + L+PGGVL   +ES      +  +++ I RE F     YA   + SV  YPSG+  +   S E P   ++ P     K     +     + ++      AF  +PAF++RE++
Sbjct:  156 YDVIIIDGADPIGPSKELFSNSFLKDCKRILKPGGVLATQSESPESFQEIHINIVKILREIF----DYADPMYGSVSIYPSGLWSWAFASMENP--KYIYP-----KKSRVKEISENCQVWSERWQQGAFNTIPAFIERELA 286          
The following BLAST results are available for this feature:
BLAST of CN185677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
SPEE_ALKMQ3.349e-1232.39Spermidine synthase OS=Alkaliphilus metalliredigen... [more]
SPEE_PROM35.713e-1233.09Spermidine synthase OS=Prochlorococcus marinus (st... [more]
SPEE1_THETN5.713e-1232.85Spermidine synthase 1 OS=Thermoanaerobacter tengco... [more]
SPEE_MOOTA7.462e-1234.33Spermidine synthase OS=Moorella thermoacetica (str... [more]
SPEE_THEPX9.746e-1231.39Spermidine synthase OS=Thermoanaerobacter sp. (str... [more]
SPEE_THEP39.746e-1231.39Spermidine synthase OS=Thermoanaerobacter pseudeth... [more]
SPEE_SYNS39.746e-1230.94Spermidine synthase OS=Synechococcus sp. (strain C... [more]
SPEE_PROMM9.746e-1232.37Spermidine synthase OS=Prochlorococcus marinus (st... [more]
SPEE_ANATD2.171e-1131.34Spermidine synthase OS=Anaerocellum thermophilum (... [more]
SPEE_PROM16.317e-1130.99Spermidine synthase OS=Prochlorococcus marinus (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185677 ID=CN185677; Name=CN185677; organism=Citrus sinensis; type=EST; length=602bp
TTTTTTTTTTTTTTTTTAAGGTCAAGGTCAAGGCGTAACCCCTGGTCTAC
ATATATCATAATCACCCTATAAACTATAACACGCGGAAGCAGTAAATCTC
GCTCGTCAAGAAATCATGTGACGATTGGTATGAATCATTAGGAGACGCAT
ATTCCTTGACTTGGAGTTGGAGAATCACCAAGTACGCTCACCTCCCTCTT
CAAAAATGCAGGCAATGCAAAGGCAGCTGAGTGAATCTCCGAGTTATAGA
ACCTTAGTTCTCTTTTATGCTTGTCAGCTCCCTCCAACTTCTCAATAGGA
TTAATGGGGTTCACAAAATCAACATGAGGTCCCTCTGTTGAGCATATCAG
AAACCCAATGATACCACTTGGGTATGTTGGGACACTTGCCCAAGCATAAT
GTACAGAACCCTTAAATGTTTCACGACAAATAGAAATCATGTCCTCAATA
AGGTGAGTATGAAGCCCCATACTTTCTGCCATGTTACAGAGGACACCTCC
AGGCCTTAATGCTTTAGCAATTGTGTCAAAAAATGGCTTCTCTACAAGCT
CTTGAGCAGGACCTACAGGGTCTGATGAATCAACAATAATTGCATCATAT
TT
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