CN185675

Overview
NameCN185675
Unique NameCN185675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP1_ARATH (Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.026e-44
Identity = 84/153 (54.90%), Postives = 117/153 (76.47%), Query Frame = 1
Query:  193 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHN 648
            L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP  LKQPGPR+   QC I+R+K   T++LYL L+P+   E GKFLL+A+R RR  ++EY+IS+ A  +S+ SN Y+GK+ S+FLGT F IYD++P +N
Sbjct:   60 LPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALLVENGKFLLSAKRIRRTTYTEYVISMHADTISRSSNTYIGKIRSNFLGTKFIIYDTQPAYN 212          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP5_ORYSJ (Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.482e-43
Identity = 85/151 (56.29%), Postives = 111/151 (73.51%), Query Frame = 1
Query:  193 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPP 642
            L PELL ++I+RVE +E +WP R+ VVACA VC+ WRE+TK++VK+    G+ITFP  LKQPGPRE P QC +RR++ TST+ LYL L+PS   E  K LLAAR+ RR   + ++ISL + D S  S+ YVGKL  +FLGT FTI+DS+PP
Sbjct:   71 LPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITFPISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSPSLHGENDKLLLAARKIRRATRTSFVISLVSNDFSLSSSTYVGKLKPNFLGTKFTIFDSQPP 221          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP7_ORYSJ (Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43
Identity = 80/153 (52.29%), Postives = 116/153 (75.82%), Query Frame = 1
Query:  193 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHN 648
            L PELL ++++R+E  + +WP R++VVACA VC  WR++ KDIV++P   GK+TFP  LKQPGPR+   QC I+R+K   T++LYL L+ +   E GKFLL+A+R RR  H++YIIS+D+ ++S+ S+ Y+GKL S+FLGT F IYD++PP+N
Sbjct:   59 LPPELLRDVMKRLEEDDSNWPSRKDVVACASVCTTWRDMCKDIVRNPEFCGKLTFPVSLKQPGPRDGVIQCFIKRDKSKLTYHLYLCLSSAVLDETGKFLLSAKRSRRTTHTDYIISMDSKNISRSSSGYIGKLRSNFLGTKFIIYDTQPPYN 211          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP10_ARATH (Tubby-like F-box protein 10 OS=Arabidopsis thaliana GN=TULP10 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.311e-43
Identity = 82/153 (53.59%), Postives = 116/153 (75.82%), Query Frame = 1
Query:  193 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHN 648
            L PELL ++I+R+E +E +WP R++VVACA VC+ WR + ++IV  P + GK+TFP  LKQPGPR+   QC I+R+K   TF+L+L L+P+   E GKFLL+A+R RR   +EYIIS+DA ++S+ SN+Y+GKL S+FLGT F +YD++PP N
Sbjct:   62 LPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLKQPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALLVENGKFLLSAKRTRRTTRTEYIISMDADNISRSSNSYLGKLRSNFLGTKFLVYDTQPPPN 214          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP6_ARATH (Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.630e-43
Identity = 81/151 (53.64%), Postives = 113/151 (74.83%), Query Frame = 1
Query:  193 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFS-EKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPP 642
            L PELL +II+R+E+ +  WP R++VVACA VCK WRE+TK++VK P LSG ITFP  L+QPGPR+ P QC I+R + T  + LYL L+P+ S +K K LL+A+R RR   +E+++SL   D S+ S+ Y+GKL S+FLGT FT+Y+++PP
Sbjct:   72 LPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLRQPGPRDAPIQCFIKRERATGIYRLYLGLSPALSGDKSKLLLSAKRVRRATGAEFVVSLSGNDFSRSSSNYIGKLRSNFLGTKFTVYENQPP 222          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP5_ARATH (Tubby-like F-box protein 5 OS=Arabidopsis thaliana GN=TULP5 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.139e-42
Identity = 79/149 (53.02%), Postives = 114/149 (76.51%), Query Frame = 1
Query:  205 LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHN 648
            LL +++++++ +E +WP R+ VVACA VCK WR + KDIVKSP  SGK+TFP  LKQPGPR+   QC I+R+K   T++LYL+L+P+   E GKFLL+A+R RR  ++EY+IS+DA ++S+ S+ Y+GKL S+FLGT F +YD+ P +N
Sbjct:   62 LLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLKQPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAILVESGKFLLSAKRSRRATYTEYVISMDADNISRSSSTYIGKLKSNFLGTKFIVYDTAPAYN 210          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP13_ORYSJ (Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.225e-42
Identity = 83/153 (54.25%), Postives = 113/153 (73.86%), Query Frame = 1
Query:  193 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLAL-TPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHN 648
            L PELL +II R+E +E +WP R++VVACA VC+ WRE+ K+IVK+P L GKITFP  L+QPGPR+   QC IRR+K T T+YLYL+L +    + GKFLL+A+R      +EY+IS++A +LS+ +N  +GKL S+FLGT F IYD+  P+N
Sbjct:   56 LPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKITFPISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSLGSAVLVDNGKFLLSAKRNWHATCTEYVISMNANNLSRSTNTNIGKLRSNFLGTKFVIYDTHTPYN 208          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP14_ORYSJ (Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.130e-42
Identity = 82/153 (53.59%), Postives = 109/153 (71.24%), Query Frame = 1
Query:  193 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPS-FSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHN 648
            L PELL ++I R+E +E +WP R+NVVACA VC+ WR++ ++IVK+P   GKITFP  LKQPGPR    QC I+R+K T T+ LYL L+ +   E GKFLL+A+RY R   +EY I + A + S+ SN Y+GKL S+ LGT F IYD++PP N
Sbjct:   62 LPPELLRDVIERLEASEAAWPSRKNVVACAAVCRTWRDMCREIVKNPEFCGKITFPVSLKQPGPRNGAIQCFIKRDKSTQTYNLYLCLSSAVLVESGKFLLSAKRYSRATCTEYTIFMSADNTSRSSNMYIGKLRSNLLGTKFVIYDTQPPCN 214          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP2_ARATH (Tubby-like F-box protein 2 OS=Arabidopsis thaliana GN=TULP2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.811e-41
Identity = 85/148 (57.43%), Postives = 106/148 (71.62%), Query Frame = 1
Query:  193 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSR 636
            L PELL +II RVE +E +WP R  VV+CA VCK WR IT +IV+ P   GK+TFP  LKQPGPR+ P QC I+RN+ T+T+ LY  L PS +E  K LLAARR RR   +++IISL A + S+ S+ YVGKL S FLGT FTIYD++
Sbjct:   51 LPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLKQPGPRDSPIQCFIKRNRATATYILYYGLMPSETENDKLLLAARRIRRATCTDFIISLSAKNFSRSSSTYVGKLRSGFLGTKFTIYDNQ 198          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP3_ORYSJ (Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.035e-41
Identity = 81/154 (52.60%), Postives = 112/154 (72.73%), Query Frame = 1
Query:  193 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSF-SEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDSRPPHNG 651
            L PELL E+IRR+E  E +WP R+NVV  A VC+ WRE+ K+ V SP   GK+TFP  +KQPGPR+   QC I+RN+  ST++LYL L+    +E GKF+LAA+R+R+   +EY IS+ +G++S+ S   +GKL S+FLGT F IYD++PP+NG
Sbjct:   62 LPPELLREVIRRLEADESTWPSRRNVVCFAAVCRTWREMCKETVLSPEFCGKLTFPVSIKQPGPRDGMIQCYIKRNRSKSTYHLYLCLSNVVTAEGGKFVLAAKRHRKTTCTEYTISMVSGNISRSSRTNIGKLRSNFLGTKFIIYDTQPPYNG 215          
The following BLAST results are available for this feature:
BLAST of CN185675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TLP1_ARATH1.026e-4454.90Tubby-like F-box protein 1 OS=Arabidopsis thaliana... [more]
TLP5_ORYSJ1.482e-4356.29Tubby-like F-box protein 5 OS=Oryza sativa subsp. ... [more]
TLP7_ORYSJ4.311e-4352.29Tubby-like F-box protein 7 OS=Oryza sativa subsp. ... [more]
TLP10_ARATH4.311e-4353.59Tubby-like F-box protein 10 OS=Arabidopsis thalian... [more]
TLP6_ARATH5.630e-4353.64Tubby-like F-box protein 6 OS=Arabidopsis thaliana... [more]
TLP5_ARATH2.139e-4253.02Tubby-like F-box protein 5 OS=Arabidopsis thaliana... [more]
TLP13_ORYSJ6.225e-4254.25Tubby-like F-box protein 13 OS=Oryza sativa subsp.... [more]
TLP14_ORYSJ8.130e-4253.59Tubby-like F-box protein 14 OS=Oryza sativa subsp.... [more]
TLP2_ARATH1.811e-4157.43Tubby-like F-box protein 2 OS=Arabidopsis thaliana... [more]
TLP3_ORYSJ4.035e-4152.60Tubby-like F-box protein 3 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185675 ID=CN185675; Name=CN185675; organism=Citrus sinensis; type=EST; length=651bp
ATTGGGTGGGCGAAAATGTCTCTGAGAAATTCGTGTCTCTCTCGAAGGAT
CTCGAGATCGTTCGGAGAGGCACACAAATCTTCGAAAGAGACCGGACTCG
GCGCCGCTGACGACTCGGTCGTGTCGTCGACCACGTCGGCGTCGATGGAT
TCCGGCGCCGCCGCTGCCCACTCCTCCGGGTCATGGGCCGGGTTGCTGCC
CGAATTGCTAGGGGAGATCATAAGGCGCGTGGAGACCACAGAAGATAGCT
GGCCCCATCGCCAAAACGTTGTCGCTTGTGCTTGCGTTTGTAAGAGATGG
AGGGAAATTACCAAAGATATCGTCAAGTCTCCTTTTCTTAGTGGCAAAAT
TACCTTCCCTTCTTGCCTTAAACAGCCGGGTCCACGCGAGTTCCCTCATC
AATGTCTAATAAGGCGGAATAAGAAGACCTCAACGTTCTACCTCTATCTT
GCTCTTACCCCATCATTTAGCGAAAAGGGGAAGTTTCTTTTAGCAGCTCG
GAGATATAGGCGTGGTGCACACAGTGAGTATATCATATCTCTTGATGCTG
GTGATCTTTCTCAAGGGAGTAATGCATATGTTGGCAAATTAAGTTCTGAT
TTCCTTGGGACAAACTTTACCATTTACGACAGTCGGCCGCCTCACAATGG
T
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