CN185675

Overview
NameCN185675
Unique NameCN185675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP9_ARATH (Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.442e-39
Identity = 78/144 (54.17%), Postives = 106/144 (73.61%), Query Frame = 1
Query:  202 ELLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYD 630
            ELL EI+ RVET +   WP R+NVVACA VC+ WR +TK+IV  P  S K+TFP  LKQ GPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA + +R   ++YIISL + D+S+ SNAY+G++ S+FLGT FT++D
Sbjct:   39 ELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQSYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGTKFTVFD 182          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP11_ARATH (Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.321e-35
Identity = 74/144 (51.39%), Postives = 102/144 (70.83%), Query Frame = 1
Query:  202 ELLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPSFSEKGKFLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYD 630
            ELL EI+ RVE  +   WP R++VVACA VC+ WR +  + V  P +S K+TFP  LKQPGPR+   QC I+RN+ T +++LYL LT S ++ GKFLLAA + +    ++YIISL + D+S+ S AYVGK+ S+FLGT FT++D
Sbjct:   45 ELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQPGPRDSLVQCFIKRNRITQSYHLYLGLTNSLTDDGKFLLAACKLKHTTCTDYIISLRSDDMSRRSQAYVGKVRSNFLGTKFTVFD 188          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TLP4_ARATH (Putative Tubby-like protein 4 OS=Arabidopsis thaliana GN=TULP4 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.478e-22
Identity = 46/84 (54.76%), Postives = 60/84 (71.43%), Query Frame = 1
Query:  199 PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYL 450
            PELL +++ R+E +ED+WP R+NVV+C  VCK WR+I K+IV  P +S K TFP  LKQPGP     QC ++RN+   TFYLYL
Sbjct:    3 PELLRDVLMRIERSEDTWPSRKNVVSCVGVCKNWRQIFKEIVNVPEVSSKFTFPISLKQPGPGGSLVQCYVKRNRSNQTFYLYL 86          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  373 QPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGK--FLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDS 633
            +P P+    +C I R+KK        T++L+L       E GK  FLLA R+ ++   S Y+IS+D  DLS+G ++Y+GKL S+ +GT FT+YD+
Sbjct:  256 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDN 345          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  373 QPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGK--FLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDS 633
            +P P+    +C I R+KK        T++L+L       E GK  FLLA R+ ++   S Y+IS+D  DLS+G ++Y+GKL S+ +GT FT+YD+
Sbjct:  256 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDN 345          
BLAST of CN185675 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 38/95 (40.00%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  373 QPGPREFPHQCLIRRNKKTS------TFYLYLALTPSFSEKGK--FLLAARRYRRGAHSEYIISLDAGDLSQGSNAYVGKLSSDFLGTNFTIYDS 633
            +P P+    +C I R+KK        T++L+L       E GK  FLLA R+ ++   S Y+IS+D  DLS+G ++Y+GKL S+ +GT FT+YD+
Sbjct:  257 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDN 346          
The following BLAST results are available for this feature:
BLAST of CN185675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
TLP9_ARATH6.442e-3954.17Tubby-like F-box protein 9 OS=Arabidopsis thaliana... [more]
TLP11_ARATH4.321e-3551.39Tubby-like F-box protein 11 OS=Arabidopsis thalian... [more]
TLP4_ARATH5.478e-2254.76Putative Tubby-like protein 4 OS=Arabidopsis thali... [more]
TUB_RAT7.422e-1140.00Tubby protein homolog OS=Rattus norvegicus GN=Tub ... [more]
TUB_MOUSE7.422e-1140.00Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1[more]
TUB_HUMAN7.422e-1140.00Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185675 ID=CN185675; Name=CN185675; organism=Citrus sinensis; type=EST; length=651bp
ATTGGGTGGGCGAAAATGTCTCTGAGAAATTCGTGTCTCTCTCGAAGGAT
CTCGAGATCGTTCGGAGAGGCACACAAATCTTCGAAAGAGACCGGACTCG
GCGCCGCTGACGACTCGGTCGTGTCGTCGACCACGTCGGCGTCGATGGAT
TCCGGCGCCGCCGCTGCCCACTCCTCCGGGTCATGGGCCGGGTTGCTGCC
CGAATTGCTAGGGGAGATCATAAGGCGCGTGGAGACCACAGAAGATAGCT
GGCCCCATCGCCAAAACGTTGTCGCTTGTGCTTGCGTTTGTAAGAGATGG
AGGGAAATTACCAAAGATATCGTCAAGTCTCCTTTTCTTAGTGGCAAAAT
TACCTTCCCTTCTTGCCTTAAACAGCCGGGTCCACGCGAGTTCCCTCATC
AATGTCTAATAAGGCGGAATAAGAAGACCTCAACGTTCTACCTCTATCTT
GCTCTTACCCCATCATTTAGCGAAAAGGGGAAGTTTCTTTTAGCAGCTCG
GAGATATAGGCGTGGTGCACACAGTGAGTATATCATATCTCTTGATGCTG
GTGATCTTTCTCAAGGGAGTAATGCATATGTTGGCAAATTAAGTTCTGAT
TTCCTTGGGACAAACTTTACCATTTACGACAGTCGGCCGCCTCACAATGG
T
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