CN185674

Overview
NameCN185674
Unique NameCN185674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2496 contig Csv1_Contig2496:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURCM (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hmgA PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 6.112e-59
Identity = 111/195 (56.92%), Postives = 146/195 (74.87%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF N F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P      +LVSEF  S     T P QLRW P+ +P  PTDF++GL T+ G GS+   +G AIH+Y AN+SM +  F +ADG+ L+VPQ+GRL+IATE G+L+V P EIAV+P+G RF+V+LPDG +RG
Sbjct:   13 YLSGFANEFATEALPGALPHGRNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFEPFTGPQ-RLVSEFGDSADVPPTPPNQLRWDPLPMPVEPTDFVEGLVTMAGNGSAAAMNGCAIHLYAANRSMQDRFFYSADGELLIVPQQGRLFIATEFGRLDVEPFEIAVIPRGVRFSVALPDGDARG 206          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURPS (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei GN=hmgA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57
Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 1
Query:   88 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            DFS   +  Y+SGF N F++EA+ GALP  +NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y AN+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARG 212          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURP1 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1710b) GN=hmgA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57
Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 1
Query:   88 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            DFS   +  Y+SGF N F++EA+ GALP  +NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y AN+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARG 212          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURP0 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1106a) GN=hmgA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57
Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 1
Query:   88 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            DFS   +  Y+SGF N F++EA+ GALP  +NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y AN+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARG 212          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURMS (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain SAVP1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57
Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 1
Query:   88 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            DFS   +  Y+SGF N F++EA+ GALP  +NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y AN+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARG 212          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURMA (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei GN=hmgA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57
Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 1
Query:   88 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            DFS   +  Y+SGF N F++EA+ GALP  +NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y AN+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARG 212          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURM9 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10229) GN=hmgA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57
Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 1
Query:   88 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            DFS   +  Y+SGF N F++EA+ GALP  +NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y AN+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARG 212          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURM7 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10247) GN=hmgA PE=3 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.505e-57
Identity = 111/204 (54.41%), Postives = 146/204 (71.57%), Query Frame = 1
Query:   88 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            DFS   +  Y+SGF N F++EA+ GALP  +NSP   P+GLYAEQ SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V+EF  S+    T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y AN+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQFSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVAEFGDSDDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARG 212          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BURTA (Homogentisate 1,2-dioxygenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hmgA PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.568e-57
Identity = 110/204 (53.92%), Postives = 146/204 (71.57%), Query Frame = 1
Query:   88 DFS---DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSY--TTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            DFS   +  Y+SGF N F++EA+ GALP  +NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+  V    ++V++F  S     T P QLRW P+ +P  PTDF+DG  T+ G GS+    G AIH+Y AN+SM    F +ADG+ L+VPQ+GRL+I TE G+L+V P EIAV+P+G RFAV+LPDG +RG
Sbjct:   10 DFSKPGEAGYQSGFANEFATEALPGALPHARNSPQRAPYGLYAEQLSGTAFTAPRGHNRRSWLYRIRPAAVHRPFE-LVSGERRIVADFGDSGDVPPTPPNQLRWDPLPMPAQPTDFVDGWVTMAGNGSAAAMSGCAIHLYAANRSMRERFFYSADGELLIVPQEGRLFIMTELGRLDVEPFEIAVIPRGVRFAVALPDGRARG 212          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BORPD (Homogentisate 1,2-dioxygenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=hmgA PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.758e-57
Identity = 108/195 (55.38%), Postives = 141/195 (72.31%), Query Frame = 1
Query:  100 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            L Y+SGFGN +++EA+ GALP G+NSP  CP+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF+P   A  + +S+F  +    TP QLRW P+ +PD+PTDFI+G+ T  G G      G  IH+Y AN+SM    F NADG+ L+VPQ+GRL +ATE G +EV P EIAV+P+G R  V LPDG +RG
Sbjct:    3 LQYQSGFGNDWATEALPGALPAGRNSPQRCPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPAAQHRPFEPFDGA-ARWLSDFGAAP--VTPNQLRWSPLPLPDAPTDFIEGVQTWGGNGGPGEHGGVGIHLYAANRSMQGRYFYNADGELLIVPQQGRLRLATELGIIEVEPLEIAVIPRGVRLRVDLPDGQARG 194          
The following BLAST results are available for this feature:
BLAST of CN185674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_BURCM6.112e-5956.92Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]
HGD_BURPS1.505e-5754.41Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURP11.505e-5754.41Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURP01.505e-5754.41Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURMS1.505e-5754.41Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURMA1.505e-5754.41Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURM91.505e-5754.41Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURM71.505e-5754.41Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURTA2.568e-5753.92Homogentisate 1,2-dioxygenase OS=Burkholderia thai... [more]
HGD_BORPD9.758e-5755.38Homogentisate 1,2-dioxygenase OS=Bordetella petrii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185674 ID=CN185674; Name=CN185674; organism=Citrus sinensis; type=EST; length=685bp
ATGGATTGTTAGTGAGCTGCTGAGACACAAATGGAGAACAAGAGTCAACA
TCAATCATCATCATTAATCAGAAAAACGGACGGCGAAGATTTCTCTGATC
TGAATTACGAGTCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGAC
GGTGCGTTGCCACGTGGACAGAACAGCCCCCTCGTTTGTCCGTTCGGTCT
CTACGCCGAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCA
ATCAACGCAGTTGGTTATACAGAATAAAACCTTCTGCAACACATGAACCG
TTTAAGCCTCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAA
GTCTAACAGTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATA
TCCCTGATTCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGG
GCTGGCAGCTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTGC
CAACAAATCAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTT
TGGTAGTTCCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAA
CTGGAAGTCTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTT
TGCTGTAAGTTTACCAGATGGTCCATCACGTGGTT
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