CN185674

Overview
NameCN185674
Unique NameCN185674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2496 contig Csv1_Contig2496:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_DICDI (Homogentisate 1,2-dioxygenase OS=Dictyostelium discoideum GN=hgd PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.079e-55
Identity = 110/197 (55.84%), Postives = 139/197 (70.56%), Query Frame = 1
Query:   97 DLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDI-PDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            D  Y+SGFGNSF SEAI G LP+G+N+P  CP  LYAEQ+SG +FT+PR   QRSWLYRI+PS  H P K   P    LV   D +N +  P QLRWKP  I  D P DF++GL TI GAG + +RHG AIH+YTA KSM+N +F N+DGDFL+VPQ+G L I TE G ++V  GEI V+ +G  F+V++ +GP+RG
Sbjct:    7 DYEYQSGFGNSFESEAIKGTLPKGRNAPQNCPLDLYAEQLSGNAFTAPRHTQQRSWLYRIRPSVCHTPLK---PIDSGLVC--DLNNLHVDPNQLRWKPFPITEDKPHDFVEGLITIAGAGHASVRHGLAIHIYTATKSMENKSFYNSDGDFLIVPQQGTLDIQTEFGFMKVKSGEICVIQRGITFSVNV-EGPTRG 197          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BORPE (Homogentisate 1,2-dioxygenase OS=Bordetella pertussis GN=hmgA PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.354e-55
Identity = 103/195 (52.82%), Postives = 140/195 (71.79%), Query Frame = 1
Query:  100 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            L+Y++GFGN+ ++EA+ GALP G+NSP +CP+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P   H PF P   A  + +S+F +     TP QLRW P+ +PD+PTDFIDG++T  G G    + G  IH+Y AN+SM    F NADG+ L+VPQ+GRL +ATE G +++ P EIAV+P+G R  V L D  +RG
Sbjct:    3 LHYQTGFGNACATEALPGALPAGRNSPQICPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPGVQHLPFAPFAGAQ-RWLSDFGRQP--VTPNQLRWSPLPMPDAPTDFIDGMHTWGGNGGPEEQSGVGIHLYAANRSMQGRFFYNADGEMLIVPQQGRLRLATELGLIDIEPYEIAVVPRGVRLRVELLDDVARG 194          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BORPA (Homogentisate 1,2-dioxygenase OS=Bordetella parapertussis GN=hmgA PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.993e-55
Identity = 103/195 (52.82%), Postives = 139/195 (71.28%), Query Frame = 1
Query:  100 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            L Y++GFGN+ ++EA+ GALP G+NSP +CP+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P   H PF P   A  + +S+F +     TP QLRW P+ +PD+PTDFIDG++T  G G    + G  IH+Y AN+SM    F NADG+ L+VPQ+GRL +ATE G +++ P EIAV+P+G R  V L D  +RG
Sbjct:    3 LQYQTGFGNACATEALPGALPAGRNSPQICPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPGVQHLPFAPFAGAQ-RWLSDFGRQP--VTPNQLRWSPLPMPDAPTDFIDGMHTWGGNGGPEEQSGVGIHLYAANRSMQGRFFYNADGEMLIVPQQGRLRLATELGLIDIEPYEIAVVPRGVRLRVELLDDVARG 194          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BORBR (Homogentisate 1,2-dioxygenase OS=Bordetella bronchiseptica GN=hmgA PE=3 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 6.993e-55
Identity = 103/195 (52.82%), Postives = 139/195 (71.28%), Query Frame = 1
Query:  100 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            L Y++GFGN+ ++EA+ GALP G+NSP +CP+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P   H PF P   A  + +S+F +     TP QLRW P+ +PD+PTDFIDG++T  G G    + G  IH+Y AN+SM    F NADG+ L+VPQ+GRL +ATE G +++ P EIAV+P+G R  V L D  +RG
Sbjct:    3 LQYQTGFGNACATEALPGALPAGRNSPQICPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPGVQHLPFAPFAGAQ-RWLSDFGRQP--VTPNQLRWSPLPMPDAPTDFIDGMHTWGGNGGPEEQSGVGIHLYAANRSMQGRFFYNADGEMLIVPQQGRLRLATELGLIDIEPYEIAVVPRGVRLRVELLDDVARG 194          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BORA1 (Homogentisate 1,2-dioxygenase OS=Bordetella avium (strain 197N) GN=hmgA PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 9.133e-55
Identity = 106/195 (54.36%), Postives = 135/195 (69.23%), Query Frame = 1
Query:  100 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            LNY+SGFGN+ ++EA+ GALP+G+NSP  CP+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P   H PF+P   A   L    D      TP QLRW P+ +P +PTDFIDG++T  G G    + G  IH+Y AN+SM    F NAD + L+VPQ GRL +ATE G L++ P EIAVLP+G RF V L D  +RG
Sbjct:    3 LNYQSGFGNACATEALPGALPQGRNSPQQCPYGLYAEQLSGTAFTAPRSENRRSWLYRIRPGVVHRPFEPYAGAPHWLA---DFGTGPVTPNQLRWSPLPLPATPTDFIDGVHTWGGNGGPDEQSGVGIHLYAANQSMKGRFFYNADAEMLLVPQLGRLRLATEMGLLDLEPLEIAVLPRGVRFRVELLDAEARG 194          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RALPJ (Homogentisate 1,2-dioxygenase OS=Ralstonia pickettii (strain 12J) GN=hmgA PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.657e-54
Identity = 106/193 (54.92%), Postives = 134/193 (69.43%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y+SGFGN FS+EA+ GALP GQNSP   P+GLYAEQISGT+FT+PR  N+RSWLYRI+P A H PF+    A G+  S F++     +P QLRW P+  P + TDFIDG+ T  G G    + G  IH+Y AN  M +  F NADG+ L+VPQ+GRL + TE G ++V P EIAV+P+G RF V LPDG +RG
Sbjct:   22 YQSGFGNEFSTEALPGALPHGQNSPQKAPYGLYAEQISGTAFTAPRAHNRRSWLYRIRPGAVHLPFEAM--AQGRFHSHFNEVPP--SPNQLRWDPLPAPAAGTDFIDGIVTFAGNGGPDAQTGCGIHLYAANADMTDRFFYNADGELLIVPQQGRLRLLTEMGVVDVEPLEIAVIPRGVRFRVELPDGDARG 210          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RALSO (Homogentisate 1,2-dioxygenase OS=Ralstonia solanacearum GN=hmgA PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.533e-54
Identity = 105/193 (54.40%), Postives = 135/193 (69.95%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y+SGFGN F++EA+ GALP GQNSP   P+GLYAEQ+SGT+FT+PR  N+R+WLYRI+P+A H PF+P   A  +  S+F    +  +P QLRW P+  P + TDFIDG+ T  G G    + G  IH+Y AN SM    F NADG+ L+VPQ+GRL + TE G L+V P EIAV+P+G RF V LPDG +RG
Sbjct:   22 YQSGFGNEFATEALPGALPHGQNSPQQAPYGLYAEQLSGTAFTAPRAHNRRAWLYRIRPAAVHLPFEPI--AQDRFHSDFHAVPA--SPNQLRWDPLPAPAAGTDFIDGIVTFAGNGGPDAQTGCGIHLYAANASMTGRFFYNADGELLIVPQQGRLRLLTELGVLDVEPLEIAVIPRGVRFRVELPDGEARG 210          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RALEJ (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain JMP134) GN=hmgA PE=3 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.010e-53
Identity = 102/193 (52.85%), Postives = 134/193 (69.43%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF N F++EA+ GALP GQNSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P A H+PF   +    + +S FD+     +P Q+RW P  +P +PTDFIDG+ T+ G G      G  IH+Y AN+SM +  F NADG+ L+VPQ+GR+   TE G+L+V P EI V+P+G RF V LPDG +RG
Sbjct:   13 YMSGFANEFATEALPGALPVGQNSPQRAPYGLYAEQLSGTAFTAPRAHNRRSWLYRIRPGAVHKPFT--LVEQSRFLSRFDEVPP--SPNQMRWSPPAMPTTPTDFIDGIVTMAGNGGPDAMTGCGIHLYLANQSMQDRFFYNADGEMLIVPQQGRVRFVTEMGRLDVEPQEIVVIPRGVRFRVELPDGEARG 201          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RALEH (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hmgA PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.722e-53
Identity = 102/193 (52.85%), Postives = 133/193 (68.91%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF N F++EA+ GALP G+NSP   P+GLYAEQ+SGT+FT+PR  N+RSWLYRI+P+A H PF        + +S FD+     +P Q+RW P  +P  PTDF+DG+ T+ G G      G  IH+Y AN+SM +  F NADG+ L+VPQ+GRL + TE G+LEV P EI V+P+G RF V LPDG +RG
Sbjct:   13 YMSGFANEFATEALPGALPVGRNSPQCAPYGLYAEQLSGTAFTAPRAHNRRSWLYRIRPAAMHTPFTQI--EQSRFLSRFDQVPP--SPNQMRWSPPAMPSVPTDFVDGIVTMAGNGGPEAMTGCGIHLYLANQSMQDRFFYNADGEMLIVPQQGRLLMVTELGRLEVEPQEIVVIPRGVRFRVELPDGEARG 201          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_MYXXD (Homogentisate 1,2-dioxygenase OS=Myxococcus xanthus (strain DK 1622) GN=hmgA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.837e-53
Identity = 105/194 (54.12%), Postives = 137/194 (70.62%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVS-EFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGFGN F++EA+ GALP GQNSP   PFGLYAEQ+SG++FT+PR+ N+RSWLYR++PSA H  F+P   A G L S  FD+  +  +P +LRW P   P  PTDF+DGL T  G G +    G +IH+Y AN+SM +  F +ADG+ L+VPQ GRL + TE G L+V+PGEIAV+P+G RF   LP+G + G
Sbjct:   14 YLSGFGNEFATEAVPGALPEGQNSPQRAPFGLYAEQLSGSAFTAPRRENRRSWLYRLRPSANHPAFQPL--AQGLLRSGPFDEVPA--SPNRLRWSPQPPPAQPTDFVDGLVTYAGNGDAASGAGISIHLYAANRSMVDRVFFDADGELLIVPQAGRLRLVTELGVLDVAPGEIAVVPRGVRFRAELPEGQAAG 203          
The following BLAST results are available for this feature:
BLAST of CN185674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_DICDI1.079e-5555.84Homogentisate 1,2-dioxygenase OS=Dictyostelium dis... [more]
HGD_BORPE5.354e-5552.82Homogentisate 1,2-dioxygenase OS=Bordetella pertus... [more]
HGD_BORPA6.993e-5552.82Homogentisate 1,2-dioxygenase OS=Bordetella parape... [more]
HGD_BORBR6.993e-5552.82Homogentisate 1,2-dioxygenase OS=Bordetella bronch... [more]
HGD_BORA19.133e-5554.36Homogentisate 1,2-dioxygenase OS=Bordetella avium ... [more]
HGD_RALPJ2.657e-5454.92Homogentisate 1,2-dioxygenase OS=Ralstonia pickett... [more]
HGD_RALSO4.533e-5454.40Homogentisate 1,2-dioxygenase OS=Ralstonia solanac... [more]
HGD_RALEJ1.010e-5352.85Homogentisate 1,2-dioxygenase OS=Ralstonia eutroph... [more]
HGD_RALEH1.722e-5352.85Homogentisate 1,2-dioxygenase OS=Ralstonia eutroph... [more]
HGD_MYXXD3.837e-5354.12Homogentisate 1,2-dioxygenase OS=Myxococcus xanthu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185674 ID=CN185674; Name=CN185674; organism=Citrus sinensis; type=EST; length=685bp
ATGGATTGTTAGTGAGCTGCTGAGACACAAATGGAGAACAAGAGTCAACA
TCAATCATCATCATTAATCAGAAAAACGGACGGCGAAGATTTCTCTGATC
TGAATTACGAGTCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGAC
GGTGCGTTGCCACGTGGACAGAACAGCCCCCTCGTTTGTCCGTTCGGTCT
CTACGCCGAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCA
ATCAACGCAGTTGGTTATACAGAATAAAACCTTCTGCAACACATGAACCG
TTTAAGCCTCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAA
GTCTAACAGTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATA
TCCCTGATTCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGG
GCTGGCAGCTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTGC
CAACAAATCAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTT
TGGTAGTTCCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAA
CTGGAAGTCTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTT
TGCTGTAAGTTTACCAGATGGTCCATCACGTGGTT
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