CN185674

Overview
NameCN185674
Unique NameCN185674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2496 contig Csv1_Contig2496:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_PSEE4 (Homogentisate 1,2-dioxygenase OS=Pseudomonas entomophila (strain L48) GN=hmgA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.255e-45
Identity = 100/197 (50.76%), Postives = 127/197 (64.47%), Query Frame = 1
Query:  100 LNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFK--PRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            L Y SGFGN F+SEA+ GALP GQNSP   P+GLYAE +SGT+FT  R   +R+WLYRI+PSA H  F+   R P  G L           TP +LRW P  +P  PTDFI+G   +    +S    G +I++Y AN+SM+   F NADG+ L+VP++GRL IATE G LEV P EIAV+P+G +F V L D  +RG
Sbjct:    9 LQYLSGFGNEFASEALPGALPVGQNSPQKAPYGLYAELLSGTAFTMTRSELRRTWLYRIRPSALHPRFERLERQPLTGAL--------GAITPNRLRWSPQPMPAEPTDFIEGWLPMVANSASEKPAGVSIYIYRANRSMER-VFFNADGELLLVPEQGRLRIATELGVLEVEPLEIAVIPRGMKFRVELLDDQARG 196          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_EMENI (Homogentisate 1,2-dioxygenase OS=Emericella nidulans GN=hmgA PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.568e-45
Identity = 92/193 (47.67%), Postives = 125/193 (64.77%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y++GF +   SEAI+GALP G NSP   P+GLYAE++SGT+FT+PR  N+++W+YRI P+A HE F     +    +S+  K      P QLRW P D+ D   D++ GL+ + G+G   ++ G  I +Y A K M   AF +ADGDFL+V Q G L I TE G+L V P EI V+P+G R+ V+LPDGP RG
Sbjct:   14 YQNGFDSYHESEAIEGALPVGHNSPQKAPYGLYAEKLSGTAFTAPRHENKQTWVYRILPAAAHENFVEEDASSYHTLSDAKKLQHI--PNQLRWDPFDL-DETVDWVHGLHLVAGSGDPTVKQGLGILLYAAGKDMGKEAFYSADGDFLIVAQHGVLDIQTELGRLLVRPNEICVIPRGVRYRVTLPDGPVRG 203          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_NITHX (Homogentisate 1,2-dioxygenase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hmgA PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.252e-44
Identity = 91/193 (47.15%), Postives = 119/193 (61.66%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H     ++ A  KL              QLRW P  IP+    F+  + T+  AG +  + G A H+Y   +SM +  F NADG+ L VPQ G L   TE G ++  PGEIAV+P+G +F V +P GP+RG
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVRHSGHFVKIDA--KLWRTAPCLEHDMPLAQLRWDPTPIPEDELTFVQSVRTMTTAGDAHTQTGMAAHIYLITRSMVDQHFYNADGEMLFVPQGGSLRFVTEFGVIDTEPGEIAVIPRGVKFRVEIPSGPARG 211          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_BRAJA (Homogentisate 1,2-dioxygenase OS=Bradyrhizobium japonicum GN=hmgA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.110e-43
Identity = 88/194 (45.36%), Postives = 121/194 (62.37%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTP-TQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H     +  A    +      + Y  P  Q+RW P  +P     F+ G+ T+  AG    + G A H+Y   KSM +  F NADG+ + V Q+G L + TE G+++  PGEI V+P+G +F V +P+GP+RG
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVKHSGRFEKADAG---LWRSAPCHEYDLPIAQMRWDPTPVPKEEVTFVQGVQTMTTAGDVNTQAGMAAHVYLITKSMVDQHFYNADGELMFVLQQGNLRLVTEFGRIDAEPGEIVVIPRGVKFRVEIPNGPARG 211          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RHOPB (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisB18) GN=hmgA PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.756e-43
Identity = 93/194 (47.94%), Postives = 122/194 (62.89%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTP-TQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGFGNSF +EA+ GALP G+NSP   P+GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H     +  A    +      + +  P  QLRW P  +P     F+ G+ T+  AG    + G A HMY  + SM N  F NADG+ + VPQ+G L + TE G + V+PGEIAV+P+G +F V L DGP+RG
Sbjct:   21 YMSGFGNSFETEALPGALPIGRNSPQRAPYGLYAEQLSGSPFTAPRGSNERSWLYRIRPSVQHSGRFEKAEAG---LWRSAPCHEHDMPIAQLRWDPPPLPQRAQTFLQGVETMTTAGDVNTQAGMAAHMYLISASMVNQHFYNADGELMFVPQQGGLRLVTEFGVIGVAPGEIAVIPRGVKFRVELIDGPARG 211          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RHILO (Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN=hmgA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.787e-42
Identity = 92/200 (46.00%), Postives = 122/200 (61.00%), Query Frame = 1
Query:   85 EDFSDLNYESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            ED    +Y  GFGN F +E + G+LP+G+NSP    +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H   + +  ++    +  +  +      Q RW PV +P  PTDFI G+ +I  AG    + G A H+Y AN+SM +  F NADG+ LVVPQ G L   TE G +E+ PGEIAVLP+G  F   L D   RG
Sbjct:   18 EDRMAFSYMPGFGNDFETETLPGSLPQGRNSPQRPAYGLYAEQLSGSPFTAPRGTNERSWLYRIRPSVKHTG-RFKAASYPLWKTAPNVGDHELALGQYRWNPVPMPKEPTDFIQGMRSITTAGDVLGQTGMAAHVYVANRSMVDDHFFNADGELLVVPQVGALRFVTEMGVIELRPGEIAVLPRGLVFKAELVDKDVRG 216          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RHOPT (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain TIE-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.975e-41
Identity = 89/194 (45.88%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHE-PFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H   F        +    F+         QLRW P  +P     F+ G+ T+  AG    + G A H+Y   +SM +  F NADG+ + VPQ+G L + TE G + + P EIAV+P+G +F V L DGP+RG
Sbjct:   21 YMSGFGNSFETEALPGALPVGRNSPQRCAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVKHSGRFAKTDMGLWRSAPCFEHD---LPIAQLRWDPPPMPQEKLTFLQGVRTMTTAGDVNTQAGMATHLYLITQSMVDQHFYNADGEMMFVPQQGSLRLVTEFGIITIEPAEIAVIPRGIKFRVELVDGPARG 211          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RHOPA (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.580e-41
Identity = 89/194 (45.88%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHE-PFKPRVPAHGKLVSEFDKSNSYTTPTQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGFGNSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H   F        +    F+         QLRW P  +P     F+ G+ T+  AG    + G A H+Y   +SM +  F NADG+ + VPQ+G L + TE G + + P EIAV+P+G +F V L DGP+RG
Sbjct:   21 YMSGFGNSFETEALPGALPVGRNSPQRCAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVKHSGRFAKTDMGLWRSAPCFEHD---LPIAQLRWDPPPMPQEALTFLQGVRTMTTAGDVNTQAGMATHLYLITQSMVDQHFYNADGEMMFVPQQGSLRLVTEFGIITIEPAEIAVIPRGVKFRVELVDGPARG 211          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RHOP5 (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisA53) GN=hmgA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.580e-41
Identity = 88/194 (45.36%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTP-TQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGF NSF +EA+ GALP G+NSP  C +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H     R       +      + +  P  QLRW P  +P     F+ G+ T+  AG +  + G A H+Y    SM + AF NADG+ + VPQ+G L   TE G+++  PGEI V+P+G +F V L  GP+RG
Sbjct:   21 YMSGFKNSFETEALPGALPIGRNSPQRCAYGLYAEQLSGSPFTAPRGSNERSWLYRIRPSVKHSG---RFAKADVGLWRTAPCHEHEMPIAQLRWDPPPLPQHEQTFLQGVVTMTTAGDANTQAGMAAHIYLITASMVDQAFYNADGELMFVPQQGSLRFVTEFGRIDAGPGEIVVIPRGVKFRVELTGGPARG 211          
BLAST of CN185674 vs. ExPASy Swiss-Prot
Match: HGD_RHOPS (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisB5) GN=hmgA PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.506e-41
Identity = 89/194 (45.88%), Postives = 118/194 (60.82%), Query Frame = 1
Query:  106 YESGFGNSFSSEAIDGALPRGQNSPLVCPFGLYAEQISGTSFTSPRKLNQRSWLYRIKPSATHEPFKPRVPAHGKLVSEFDKSNSYTTP-TQLRWKPVDIPDSPTDFIDGLYTICGAGSSFLRHGYAIHMYTANKSMDNCAFCNADGDFLVVPQKGRLWIATECGKLEVSPGEIAVLPQGFRFAVSLPDGPSRG 684
            Y SGFGNSF +EA+ GALP G+NSP    +GLYAEQ+SG+ FT+PR  N+RSWLYRI+PS  H     R       +        +  P  QLRW    +P     F+ G+ T+  AG    + G A HMY  ++SM +  F NADG+ + VPQ+GRL + TE G + + P EIAV+P+G +F V L DGP+RG
Sbjct:   21 YMSGFGNSFETEALPGALPVGRNSPQRAAYGLYAEQLSGSPFTAPRGANERSWLYRIRPSVKHSG---RFAKADMGLWRSAPCLEHDMPIAQLRWDAPPMPTEEVTFVQGVRTMTTAGDVNTQAGMAAHMYLISRSMVDQHFYNADGELMFVPQQGRLRLVTEFGVIAIEPAEIAVIPRGVKFRVELVDGPARG 211          
The following BLAST results are available for this feature:
BLAST of CN185674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_PSEE42.255e-4550.76Homogentisate 1,2-dioxygenase OS=Pseudomonas entom... [more]
HGD_EMENI8.568e-4547.67Homogentisate 1,2-dioxygenase OS=Emericella nidula... [more]
HGD_NITHX4.252e-4447.15Homogentisate 1,2-dioxygenase OS=Nitrobacter hambu... [more]
HGD_BRAJA2.110e-4345.36Homogentisate 1,2-dioxygenase OS=Bradyrhizobium ja... [more]
HGD_RHOPB2.756e-4347.94Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHILO1.787e-4246.00Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN... [more]
HGD_RHOPT1.975e-4145.88Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOPA2.580e-4145.88Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOP52.580e-4145.36Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOPS7.506e-4145.88Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185674 ID=CN185674; Name=CN185674; organism=Citrus sinensis; type=EST; length=685bp
ATGGATTGTTAGTGAGCTGCTGAGACACAAATGGAGAACAAGAGTCAACA
TCAATCATCATCATTAATCAGAAAAACGGACGGCGAAGATTTCTCTGATC
TGAATTACGAGTCAGGATTCGGCAACAGCTTCTCGTCGGAGGCGATCGAC
GGTGCGTTGCCACGTGGACAGAACAGCCCCCTCGTTTGTCCGTTCGGTCT
CTACGCCGAACAGATCTCCGGCACCTCCTTCACCTCCCCTCGCAAGCTCA
ATCAACGCAGTTGGTTATACAGAATAAAACCTTCTGCAACACATGAACCG
TTTAAGCCTCGAGTGCCTGCTCATGGGAAGCTGGTGAGTGAATTTGACAA
GTCTAACAGTTACACTACGCCGACTCAGCTCCGGTGGAAGCCGGTTGATA
TCCCTGATTCACCGACTGATTTTATTGACGGGTTGTACACGATATGTGGG
GCTGGCAGCTCATTTCTTCGGCATGGATATGCTATTCACATGTACACTGC
CAACAAATCAATGGACAACTGTGCCTTCTGTAATGCTGATGGAGATTTTT
TGGTAGTTCCCCAAAAAGGAAGGCTGTGGATTGCTACTGAATGTGGAAAA
CTGGAAGTCTCTCCTGGTGAAATTGCCGTTTTACCTCAAGGGTTTCGTTT
TGCTGTAAGTTTACCAGATGGTCCATCACGTGGTT
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