CN185673

Overview
NameCN185673
Unique NameCN185673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEAB (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=hmgA PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 4.064e-50
Identity = 96/163 (58.90%), Postives = 120/163 (73.62%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA GF+PGGASLHSCM+ HGPD ++ +  IA   K  P++I  TMAFMFE+  + R    ALE+P + +DY  CW  L S F+
Sbjct:  268 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVHGLANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAGGFVPGGASLHSCMSAHGPDAESCDKAIAADLK--PHRIDQTMAFMFETSQVLRPSRAALETPALQNDYDACWASLVSTFN 428          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEA7 (Homogentisate 1,2-dioxygenase OS=Pseudomonas aeruginosa (strain PA7) GN=hmgA PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 9.053e-50
Identity = 95/163 (58.28%), Postives = 120/163 (73.62%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA GF+PGGASLHSCM+ HGPD ++ +  IA   +  P++I  TMAFMFE+  + R    ALE+P + +DY  CW  L S F+
Sbjct:  268 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVHGLANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAGGFVPGGASLHSCMSAHGPDAESCDKAIAADLR--PHRIDQTMAFMFETSQVLRPSRAALETPALQNDYDACWASLVSTFN 428          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_DROME (Homogentisate 1,2-dioxygenase OS=Drosophila melanogaster GN=hgo PE=1 SV=3)

HSP 1 Score: 197.208 bits (500), Expect = 9.053e-50
Identity = 98/164 (59.76%), Postives = 116/164 (70.73%), Query Frame = -3
Query:  324 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITD-TMAFMFESCLIPRICPWALES-PFMDHDYYQCWIGLRSHF 809
            VP+KYDLSKF   N+V  DH DPSI TVLT P+ + G A+ DFVIFPPRW V EHTFRPPYYHRNCMSEFMGLI G YEAK DGF  GGA+LHS MTPHGPD K +E   A  +K  P ++ + T AFMFES L   +  W  E+   +D  YY+CW  L+++F
Sbjct:  273 VPFKYDLSKFMVINSVSFDHCDPSIFTVLTCPSLRAGTAIADFVIFPPRWSVQEHTFRPPYYHRNCMSEFMGLILGKYEAKEDGFAAGGATLHSMMTPHGPDVKCFEG--ASNAKLVPERVAEGTQAFMFESSLSLAVTKWGEETCQKLDAAYYECWQALKNNF 434          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEPK (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain KT2440) GN=hmgA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.017e-49
Identity = 97/163 (59.51%), Postives = 117/163 (71.78%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GFLPGGASLH  M+ HGPD +T E  IA  +   P+KI +TMAFMFE+  + R    ALE P +  DY  CW  L S F+
Sbjct:  269 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVHGMANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLINGAYDAKAEGFLPGGASLHGVMSAHGPDAETCEKAIA--ADLAPHKIDNTMAFMFETSQVLRPSLQALECPQLQADYDSCWATLPSTFN 429          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEPG (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain GB-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.017e-49
Identity = 97/163 (59.51%), Postives = 117/163 (71.78%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GFLPGGASLH  M+ HGPD +T E  IA  +   P+KI +TMAFMFE+  + R    ALE P +  DY  CW  L S F+
Sbjct:  269 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVHGLANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLINGAYDAKAEGFLPGGASLHGVMSAHGPDAETCEKAIA--ADLAPHKIDNTMAFMFETSQVLRPSLQALECPQLQADYDSCWATLPSTFN 429          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEP1 (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=hmgA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.017e-49
Identity = 97/163 (59.51%), Postives = 117/163 (71.78%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GFLPGGASLH  M+ HGPD +T E  IA  +   P+KI +TMAFMFE+  + R    ALE P +  DY  CW  L S F+
Sbjct:  269 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVHGMANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLINGAYDAKAEGFLPGGASLHGVMSAHGPDAETCEKAIA--ADLAPHKIDNTMAFMFETSQVLRPSLQALECPQLQADYDSCWATLPSTFN 429          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEPW (Homogentisate 1,2-dioxygenase OS=Pseudomonas putida (strain W619) GN=hmgA PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.634e-49
Identity = 97/163 (59.51%), Postives = 117/163 (71.78%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GFLPGGASLH  M+ HGPD +T E  IA  +   P+KI +TMAFMFE+  + R    ALE P +  DY  CW  L S F+
Sbjct:  269 VPYKYDLRRFNTLGTVSFDHPDPSIFTVLTSPTSVHGLANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLISGAYDAKAEGFLPGGASLHGVMSAHGPDAETCEKAIA--ADLAPHKIDNTMAFMFETSQVLRPSLQALECPQLQADYDSCWATLPSTFN 429          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEE4 (Homogentisate 1,2-dioxygenase OS=Pseudomonas entomophila (strain L48) GN=hmgA PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.440e-49
Identity = 96/163 (58.90%), Postives = 118/163 (72.39%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT   G+A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA+GFLPGGASLH  M+ HGPD +T +  I+      P+KI +TMAFMFE+  + R    ALESP +  DY  CW  L S F+
Sbjct:  269 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVHGMANMDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGAYDAKAEGFLPGGASLHGVMSAHGPDAETCDKAIS--VDLAPHKIDNTMAFMFETSQVLRPSRQALESPQLQADYDSCWATLPSTFN 429          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_CAUCR (Homogentisate 1,2-dioxygenase OS=Caulobacter crescentus GN=hmgA PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.493e-49
Identity = 95/158 (60.13%), Postives = 113/158 (71.52%), Query Frame = -3
Query:  339 MVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIG 812
            + PY+YDLS+F   NTV  DH DPSI TVLT+P+D PG A  DFVIFPPRW+VAE TFRPP++HRN MSEFMGLI G Y+AKA GF+PGGASLH+CM+ HGPD  +++   A      P+KI  TMAFMFES  + R    ALES  +  DY  CW G
Sbjct:  263 LTPYRYDLSRFNTINTVSYDHPDPSIFTVLTSPSDTPGTANCDFVIFPPRWMVAEDTFRPPWFHRNVMSEFMGLIHGAYDAKAGGFVPGGASLHNCMSDHGPDVASHKK--ATEVVLAPHKIDGTMAFMFESRWVFRPTHLALESAALQSDYDACWTG 418          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_CAUCN (Homogentisate 1,2-dioxygenase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=hmgA PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.493e-49
Identity = 95/158 (60.13%), Postives = 113/158 (71.52%), Query Frame = -3
Query:  339 MVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIG 812
            + PY+YDLS+F   NTV  DH DPSI TVLT+P+D PG A  DFVIFPPRW+VAE TFRPP++HRN MSEFMGLI G Y+AKA GF+PGGASLH+CM+ HGPD  +++   A      P+KI  TMAFMFES  + R    ALES  +  DY  CW G
Sbjct:  263 LTPYRYDLSRFNTINTVSYDHPDPSIFTVLTSPSDTPGTANCDFVIFPPRWMVAEDTFRPPWFHRNVMSEFMGLIHGAYDAKAGGFVPGGASLHNCMSDHGPDVASHKK--ATEVVLAPHKIDGTMAFMFESRWVFRPTHLALESAALQSDYDACWTG 418          
The following BLAST results are available for this feature:
BLAST of CN185673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_PSEAB4.064e-5058.90Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_PSEA79.053e-5058.28Homogentisate 1,2-dioxygenase OS=Pseudomonas aerug... [more]
HGD_DROME9.053e-5059.76Homogentisate 1,2-dioxygenase OS=Drosophila melano... [more]
HGD_PSEPK2.017e-4959.51Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEPG2.017e-4959.51Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEP12.017e-4959.51Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEPW2.634e-4959.51Homogentisate 1,2-dioxygenase OS=Pseudomonas putid... [more]
HGD_PSEE43.440e-4958.90Homogentisate 1,2-dioxygenase OS=Pseudomonas entom... [more]
HGD_CAUCR4.493e-4960.13Homogentisate 1,2-dioxygenase OS=Caulobacter cresc... [more]
HGD_CAUCN4.493e-4960.13Homogentisate 1,2-dioxygenase OS=Caulobacter cresc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185673 ID=CN185673; Name=CN185673; organism=Citrus sinensis; type=EST; length=814bp
GGCCCCCTTTTTTTTAGCATAAAGGACACACACCATACATATACACATTT
TTTAAAATTCCTTTTACATCAATTATATATGTACATCCAAGTTTTTATCA
CTACTTAGTACATTCACAAACACACAAACAAAAGCTATATATAACCCAAT
CATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTGTTTATAAATA
CTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTGGGGACCAAATCAGG
CGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTCCCCATCGCTT
TCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATCCAATCCAGCA
CTGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCCCAAGGGCAGA
TTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGTATCAGTGATC
TTGTATGGCCCAGCCTTGCTTCCACGTGCAATGGTGGCCTCATATGTCTT
CGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTCGCACCACCTG
GGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTATCAGACCCATA
AACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGAATGTATGCTC
TGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGCAATGCCACAC
CAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGATGGATCACCG
TGATCCACTAAAACAGTGTTGAAAGGACAGAACTTACTGAGATCATACTT
ATATGGTACCATAA
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