CN185673

Overview
NameCN185673
Unique NameCN185673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_XANCP (Homogentisate 1,2-dioxygenase OS=Xanthomonas campestris pv. campestris GN=hmgA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.868e-49
Identity = 91/161 (56.52%), Postives = 114/161 (70.81%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PY+YDL +F    ++  DH DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKADGF PGGASLH+CM+ HGPD  T++   ++   + P  IT+TMAFMFE+  + R    AL +P    DY QCW GLR  F
Sbjct:  290 PYRYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKADGFAPGGASLHNCMSGHGPDAATFDKA-SQADLSRPDVITETMAFMFETRAVLRPTAQALHAPHRQGDYQQCWAGLRKAF 449          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_XANC8 (Homogentisate 1,2-dioxygenase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=hmgA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.868e-49
Identity = 91/161 (56.52%), Postives = 114/161 (70.81%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PY+YDL +F    ++  DH DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKADGF PGGASLH+CM+ HGPD  T++   ++   + P  IT+TMAFMFE+  + R    AL +P    DY QCW GLR  F
Sbjct:  290 PYRYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKADGFAPGGASLHNCMSGHGPDAATFDKA-SQADLSRPDVITETMAFMFETRAVLRPTAQALHAPHRQGDYQQCWAGLRKAF 449          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHISN (Homogentisate 1,2-dioxygenase OS=Rhizobium sp. (strain NGR234) GN=hmgA PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.868e-49
Identity = 92/162 (56.79%), Postives = 112/162 (69.14%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 806
            PYKYDL  F P   +L DH DPSI TVLTAP+ + G A +DFV+FPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M  HGPDT  +E   A   +  P K+ +TMAFMFE+    ++  +A E   +  DY  CW GLR  F+
Sbjct:  286 PYKYDLKTFSPVGAILFDHPDPSIFTVLTAPSGEEGTANVDFVLFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGRYDAKEEGFVPGGMSLHNMMLAHGPDTSGFEK--ATNGELKPVKLDNTMAFMFETRFPQQLTRFAAELETLQDDYIDCWAGLRKRFN 445          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RALEJ (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain JMP134) GN=hmgA PE=3 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 1.001e-48
Identity = 91/162 (56.17%), Postives = 113/162 (69.75%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 806
            PYKYDL +F    ++  DH DPSI  VL +P+D PGV  +DFVIF PRWL  E++FRPP++HRN  SEFMGLI G Y+AKADGF PGGASLH+CM+ HGPD  T+ A       + P+ ITDTMAFMFE+  + R  P+A  S  +  DYY CW GL+ HF+
Sbjct:  275 PYKYDLRRFNTIGSISFDHPDPSIFLVLQSPSDTPGVDTIDFVIFGPRWLAMENSFRPPWFHRNIASEFMGLITGVYDAKADGFAPGGASLHNCMSGHGPDADTF-AKATSADTSTPHHITDTMAFMFETPGVIRPTPYAARSASLQQDYYTCWQGLKKHFN 435          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BORPE (Homogentisate 1,2-dioxygenase OS=Bordetella pertussis GN=hmgA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.001e-48
Identity = 98/167 (58.68%), Postives = 118/167 (70.66%), Query Frame = -3
Query:  309 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 806
            PYKYDL  F    ++  DH DPSI TVLT+P+D PG A +DF IFPPR L  E+TFRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD  T+E A+ A  S+A  + I DTMAFMFE+  + R    AL SP    DYYQCW GL+ HF  E+A
Sbjct:  268 PYKYDLRNFNTVGSISYDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQA--HYIRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BORPA (Homogentisate 1,2-dioxygenase OS=Bordetella parapertussis GN=hmgA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.001e-48
Identity = 98/167 (58.68%), Postives = 118/167 (70.66%), Query Frame = -3
Query:  309 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 806
            PYKYDL  F    ++  DH DPSI TVLT+P+D PG A +DF IFPPR L  E+TFRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD  T+E A+ A  S+A  + I DTMAFMFE+  + R    AL SP    DYYQCW GL+ HF  E+A
Sbjct:  268 PYKYDLRNFNTVGSISYDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQA--HYIRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BORBR (Homogentisate 1,2-dioxygenase OS=Bordetella bronchiseptica GN=hmgA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.001e-48
Identity = 98/167 (58.68%), Postives = 118/167 (70.66%), Query Frame = -3
Query:  309 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 806
            PYKYDL  F    ++  DH DPSI TVLT+P+D PG A +DF IFPPR L  E+TFRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD  T+E A+ A  S+A  + I DTMAFMFE+  + R    AL SP    DYYQCW GL+ HF  E+A
Sbjct:  268 PYKYDLRNFNTVGSISYDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQA--HYIRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFDPEQA 432          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BORA1 (Homogentisate 1,2-dioxygenase OS=Bordetella avium (strain 197N) GN=hmgA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.001e-48
Identity = 98/167 (58.68%), Postives = 120/167 (71.86%), Query Frame = -3
Query:  309 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 806
            PYKYDL  F    ++  DH DPSI TVLT+P+D PG A LDF IFPPR L  E+TFRPP++HRN  SEFMGLI+G Y+AKA+GF PGGASLH+CM+ HGPD  T+E A++A  SKA  + I DTMAFMFE+  + R    AL S  +  DYYQCW  L+ HF+ E+A
Sbjct:  268 PYKYDLRHFNTIGSISYDHPDPSIFTVLTSPSDTPGTANLDFAIFPPRILAMENTFRPPWFHRNIASEFMGLIQGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASVADTSKA--HYIRDTMAFMFETRRVIRPTRQALASAQLQGDYYQCWQDLKKHFNPEKA 432          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_AGRRK (Homogentisate 1,2-dioxygenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=hmgA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.001e-48
Identity = 92/161 (57.14%), Postives = 111/161 (68.94%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            P+KYDL  F P   +L DH DPSI TVLTAPT+  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A  S+  P K+  TMAFMFE+    ++  +A E   +  +Y +CW GL   F
Sbjct:  288 PFKYDLRTFSPVGAILFDHPDPSIFTVLTAPTESAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGISLHNMMLPHGPDASGFEK--ASNSELKPVKLDHTMAFMFETRYPQQVTKYAAELETLQDNYLECWDGLERRF 446          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_CAUSK (Homogentisate 1,2-dioxygenase OS=Caulobacter sp. (strain K31) GN=hmgA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.307e-48
Identity = 93/158 (58.86%), Postives = 115/158 (72.78%), Query Frame = -3
Query:  339 MVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIG 812
            + PYKYDL++F    TV  DH DPSI TVLTAP++ PG A +DFVIFPPRW+VAEHTFRPP++HRN MSEFMGL+ G Y+AKA GF PGGASLH+ M+ HGPD  +++A  A  +   P+KI  TMAFMFES  + R   +ALE+  +  DY  CW G
Sbjct:  265 LAPYKYDLARFNTMGTVSFDHPDPSIFTVLTAPSEIPGTANVDFVIFPPRWMVAEHTFRPPWFHRNVMSEFMGLVTGAYDAKAGGFSPGGASLHNMMSDHGPDVASHKA--ASEADLSPHKIEATMAFMFESRWVIRPTKYALETSELQADYDACWTG 420          
The following BLAST results are available for this feature:
BLAST of CN185673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_XANCP5.868e-4956.52Homogentisate 1,2-dioxygenase OS=Xanthomonas campe... [more]
HGD_XANC85.868e-4956.52Homogentisate 1,2-dioxygenase OS=Xanthomonas campe... [more]
HGD_RHISN5.868e-4956.79Homogentisate 1,2-dioxygenase OS=Rhizobium sp. (st... [more]
HGD_RALEJ1.001e-4856.17Homogentisate 1,2-dioxygenase OS=Ralstonia eutroph... [more]
HGD_BORPE1.001e-4858.68Homogentisate 1,2-dioxygenase OS=Bordetella pertus... [more]
HGD_BORPA1.001e-4858.68Homogentisate 1,2-dioxygenase OS=Bordetella parape... [more]
HGD_BORBR1.001e-4858.68Homogentisate 1,2-dioxygenase OS=Bordetella bronch... [more]
HGD_BORA11.001e-4858.68Homogentisate 1,2-dioxygenase OS=Bordetella avium ... [more]
HGD_AGRRK1.001e-4857.14Homogentisate 1,2-dioxygenase OS=Agrobacterium rad... [more]
HGD_CAUSK1.307e-4858.86Homogentisate 1,2-dioxygenase OS=Caulobacter sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185673 ID=CN185673; Name=CN185673; organism=Citrus sinensis; type=EST; length=814bp
GGCCCCCTTTTTTTTAGCATAAAGGACACACACCATACATATACACATTT
TTTAAAATTCCTTTTACATCAATTATATATGTACATCCAAGTTTTTATCA
CTACTTAGTACATTCACAAACACACAAACAAAAGCTATATATAACCCAAT
CATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTGTTTATAAATA
CTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTGGGGACCAAATCAGG
CGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTCCCCATCGCTT
TCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATCCAATCCAGCA
CTGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCCCAAGGGCAGA
TTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGTATCAGTGATC
TTGTATGGCCCAGCCTTGCTTCCACGTGCAATGGTGGCCTCATATGTCTT
CGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTCGCACCACCTG
GGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTATCAGACCCATA
AACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGAATGTATGCTC
TGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGCAATGCCACAC
CAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGATGGATCACCG
TGATCCACTAAAACAGTGTTGAAAGGACAGAACTTACTGAGATCATACTT
ATATGGTACCATAA
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