CN185673

Overview
NameCN185673
Unique NameCN185673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURM1 (Homogentisate 1,2-dioxygenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=hmgA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.307e-48
Identity = 89/165 (53.94%), Postives = 117/165 (70.91%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + TD PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+ +TMAFMFE+  + R   +AL++  +  +Y++CW G+R HF+ E+
Sbjct:  280 PYKYDLRLFNTIGSISFDHPDPSIFLVLHSQTDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDNTMAFMFETRTLIRPTRYALDTAQLQANYFECWQGIRKHFNPEQ 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_CAEEL (Homogentisate 1,2-dioxygenase OS=Caenorhabditis elegans GN=hgo-1 PE=1 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.707e-48
Identity = 98/164 (59.76%), Postives = 115/164 (70.12%), Query Frame = -3
Query:  321 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITD-TMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 809
            VPYKYDL KF   NTV  DH DPSI TVLTAP+ K G A+ DFVIFPPRW  A++TFRPPYYHRNCMSE+MGLI G YEAK  GF PGG SLHS MTPHGPD   +E  +A  +   P ++ + TM+FMFES L   I  WA+    +D DYY+ W  L+ HF+
Sbjct:  274 VPYKYDLKKFMVINTVSFDHCDPSIFTVLTAPSVKHGTAIADFVIFPPRWGCADNTFRPPYYHRNCMSEYMGLITGCYEAKEGGFKPGGGSLHSMMTPHGPDFNCFE--MASNADLKPQRVAEGTMSFMFESSLNMAITNWAVYQN-VDKDYYKDWQPLKKHFT 434          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURCM (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=hmgA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.707e-48
Identity = 89/165 (53.94%), Postives = 116/165 (70.30%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY++CW G+R HF+ E+
Sbjct:  280 PYKYDLRLFNTIGSISFDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQPDYFECWQGIRKHFNPEQ 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURCH (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain HI2424) GN=hmgA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.707e-48
Identity = 89/165 (53.94%), Postives = 116/165 (70.30%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL A +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY++CW G++ HF+ E+
Sbjct:  280 PYKYDLRLFNTIGSISFDHPDPSIFLVLQAQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIKKHFNPEQ 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURCA (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain AU 1054) GN=hmgA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.707e-48
Identity = 89/165 (53.94%), Postives = 116/165 (70.30%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL A +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY++CW G++ HF+ E+
Sbjct:  280 PYKYDLRLFNTIGSISFDHPDPSIFLVLQAQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIKKHFNPEQ 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURA4 (Homogentisate 1,2-dioxygenase OS=Burkholderia ambifaria (strain MC40-6) GN=hmgA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.707e-48
Identity = 89/165 (53.94%), Postives = 116/165 (70.30%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY++CW G+R HF+ E+
Sbjct:  280 PYKYDLRLFNTIGSISFDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIRKHFNPEQ 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURCC (Homogentisate 1,2-dioxygenase OS=Burkholderia cenocepacia (strain MC0-3) GN=hmgA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.230e-48
Identity = 89/165 (53.94%), Postives = 116/165 (70.30%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL A +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY++CW G++ HF+ E+
Sbjct:  280 PYKYDLRLFNTIGSISFDHPDPSIFLVLQAQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTCYALDTAQLQADYFECWQGIKKHFNPEQ 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHIE6 (Homogentisate 1,2-dioxygenase OS=Rhizobium etli (strain CIAT 652) GN=hmgA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.803e-48
Identity = 91/161 (56.52%), Postives = 111/161 (68.94%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            P+KYDL  F P   +L DH DPSI +VLTAPT+  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A  ++  P K+  TMAFMFE+    ++  +A E   +  DY +CW GL   F
Sbjct:  288 PFKYDLRTFSPVGAILFDHPDPSIFSVLTAPTEDAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGMSLHNMMLPHGPDALAFEK--AANAELKPVKLDHTMAFMFETRYPQQLTKYAAELETLQDDYLECWDGLERKF 446          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURS3 (Homogentisate 1,2-dioxygenase OS=Burkholderia sp. (strain 383) GN=hmgA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.803e-48
Identity = 88/165 (53.33%), Postives = 116/165 (70.30%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A      P+K+  TMAFMFE+  + R   +AL++  +  DY++CW G++ HF+ E+
Sbjct:  280 PYKYDLRLFNTIGSISFDHPDPSIFLVLQSQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASA-SDTTKPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIKKHFNPEQ 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_XANOR (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae GN=hmgA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = -3
Query:  303 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEADN 806
            PY+YDL +F    ++  DH DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I +TMAFMFE+  + R    AL +     DY QCW GLR+ F +  A N
Sbjct:  269 PYRYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIAETMAFMFETRAVLRPTQQALSAAHRQADYQQCWSGLRAAFQHPPAKN 435          
The following BLAST results are available for this feature:
BLAST of CN185673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_BURM11.307e-4853.94Homogentisate 1,2-dioxygenase OS=Burkholderia mult... [more]
HGD_CAEEL1.707e-4859.76Homogentisate 1,2-dioxygenase OS=Caenorhabditis el... [more]
HGD_BURCM1.707e-4853.94Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]
HGD_BURCH1.707e-4853.94Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURCA1.707e-4853.94Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_BURA41.707e-4853.94Homogentisate 1,2-dioxygenase OS=Burkholderia ambi... [more]
HGD_BURCC2.230e-4853.94Homogentisate 1,2-dioxygenase OS=Burkholderia ceno... [more]
HGD_RHIE63.803e-4856.52Homogentisate 1,2-dioxygenase OS=Rhizobium etli (s... [more]
HGD_BURS33.803e-4853.33Homogentisate 1,2-dioxygenase OS=Burkholderia sp. ... [more]
HGD_XANOR6.488e-4853.57Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185673 ID=CN185673; Name=CN185673; organism=Citrus sinensis; type=EST; length=814bp
GGCCCCCTTTTTTTTAGCATAAAGGACACACACCATACATATACACATTT
TTTAAAATTCCTTTTACATCAATTATATATGTACATCCAAGTTTTTATCA
CTACTTAGTACATTCACAAACACACAAACAAAAGCTATATATAACCCAAT
CATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTGTTTATAAATA
CTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTGGGGACCAAATCAGG
CGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTCCCCATCGCTT
TCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATCCAATCCAGCA
CTGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCCCAAGGGCAGA
TTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGTATCAGTGATC
TTGTATGGCCCAGCCTTGCTTCCACGTGCAATGGTGGCCTCATATGTCTT
CGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTCGCACCACCTG
GGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTATCAGACCCATA
AACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGAATGTATGCTC
TGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGCAATGCCACAC
CAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGATGGATCACCG
TGATCCACTAAAACAGTGTTGAAAGGACAGAACTTACTGAGATCATACTT
ATATGGTACCATAA
back to top