CN185673

Overview
NameCN185673
Unique NameCN185673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_XANOP (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=hmgA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = -3
Query:  303 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEADN 806
            PY+YDL +F    ++  DH DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I +TMAFMFE+  + R    AL +     DY QCW GLR+ F +  A N
Sbjct:  269 PYRYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIAETMAFMFETRAVLRPTQQALSAAHRQADYQQCWSGLRAAFQHPPAKN 435          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_XANOM (Homogentisate 1,2-dioxygenase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=hmgA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 90/168 (53.57%), Postives = 115/168 (68.45%), Query Frame = -3
Query:  303 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEADN 806
            PY+YDL +F    ++  DH DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I +TMAFMFE+  + R    AL +     DY QCW GLR+ F +  A N
Sbjct:  269 PYRYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIAETMAFMFETRAVLRPTQQALSAAHRQADYQQCWSGLRAAFQHPPAKN 435          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEPF (Homogentisate 1,2-dioxygenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 6.488e-48
Identity = 95/162 (58.64%), Postives = 117/162 (72.22%), Query Frame = -3
Query:  324 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 809
            VPYKYDL +F    TV  DH DPSI TVLT+PT   G+A LDFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI+G Y+AKA+GF+PGGASLHSCM+ HGPD +T   T A  +   P KI +TMAFMFE+  + R   +AL+ P +   Y  CW  L + F
Sbjct:  267 VPYKYDLRRFNTIGTVSFDHPDPSIFTVLTSPTSVHGLANLDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIQGEYDAKAEGFVPGGASLHSCMSAHGPDGET--CTKAINADLKPAKIDNTMAFMFETSQVLRPSRFALDCPQLQSTYDACWATLPATF 426          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURTA (Homogentisate 1,2-dioxygenase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=hmgA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.107e-47
Identity = 89/165 (53.94%), Postives = 118/165 (71.52%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y++CW GL+ HF+ E+
Sbjct:  286 PYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASAIDT-SRPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHIEC (Homogentisate 1,2-dioxygenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.445e-47
Identity = 91/161 (56.52%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F P   +  DH DPSI +VLTAPT+  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A   +  P K+  TMAFMFE+    ++  +A E   +  DY +CW GL   F
Sbjct:  288 PYKYDLRTFSPVGAISFDHPDPSIFSVLTAPTEDAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGISLHNMMLPHGPDALAFEK--ASNVELKPVKLDHTMAFMFETRYPQQLTKYAAELETLQDDYLECWDGLERKF 446          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RALEH (Homogentisate 1,2-dioxygenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.445e-47
Identity = 91/163 (55.83%), Postives = 117/163 (71.78%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 806
            PYKYDL +F    ++  DH DPSI  VL +P+  PGV  +DFVIF PRWL  + +FRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD +T+E A+ A  SK  P++I DTMAFMFE+  + R  P+A +S  +  DYY CW GL+ HF+
Sbjct:  275 PYKYDLRRFNTIGSISFDHPDPSIFLVLQSPSATPGVDTIDFVIFGPRWLAMQDSFRPPWFHRNIASEFMGLITGVYDAKAEGFAPGGASLHNCMSGHGPDAETFEKASAADTSK--PHRIEDTMAFMFETPGVIRPTPYAAQSASLQQDYYTCWQGLKKHFN 435          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURCJ (Homogentisate 1,2-dioxygenase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.445e-47
Identity = 89/166 (53.61%), Postives = 120/166 (72.29%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYE-ATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL A +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ H PD  T+E A+++  +K  P+K+  TMAFMFE+  + R   +AL++  +  DY++CW G++ HF+ E+
Sbjct:  280 PYKYDLRLFNTIGSISFDHPDPSIFLVLQAQSDTPGVDTIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHRPDADTFEKASVSDTTK--PHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQGIKKHFNPEQ 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BORPD (Homogentisate 1,2-dioxygenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.445e-47
Identity = 92/161 (57.14%), Postives = 110/161 (68.32%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F    ++  DH DPSI TVLT+P+D PG A +DF IFPPR L  E+TFRPP++HRN  SEFMGLI G Y+AKA+GF PGGASLH+CM+ HGPD  T+E   A  +    Y I DTMAFMFE+  + R    AL S  +  DYY+CW GL  HF
Sbjct:  268 PYKYDLRHFNTIGSISFDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRVLAMENTFRPPWFHRNVASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKATAADTSQAHY-IRDTMAFMFETRRVIRPTAQALASAQLQSDYYECWQGLNKHF 427          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_SINMW (Homogentisate 1,2-dioxygenase OS=Sinorhizobium medicae (strain WSM419) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.888e-47
Identity = 91/161 (56.52%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F P   +L DH DPSI TVLTAP+ + G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M  HGPD   +E   A   +  P K+ +TMAFMFE+    ++  +A E   +  DY  CW GL   F
Sbjct:  288 PYKYDLKTFSPVGAILFDHPDPSIFTVLTAPSGEEGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGRYDAKEEGFVPGGMSLHNMMLAHGPDFSGFEK--ASNGELKPVKLDNTMAFMFETRFPQQLTTFAAELETLQDDYIDCWSGLERKF 446          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHILW (Homogentisate 1,2-dioxygenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.888e-47
Identity = 90/161 (55.90%), Postives = 110/161 (68.32%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            P+KYDL  F P   +  DH DPSI +VLTAPT+  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A  ++  P K+  TMAFMFE+    ++  +A E   +  DY +CW GL   F
Sbjct:  288 PFKYDLRTFSPVGAIRFDHPDPSIFSVLTAPTEDAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGMSLHNMMLPHGPDALAFEK--AANAELKPVKLDHTMAFMFETRYPQQLTKYAAELETLQDDYLECWDGLERKF 446          
The following BLAST results are available for this feature:
BLAST of CN185673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_XANOP6.488e-4853.57Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_XANOM6.488e-4853.57Homogentisate 1,2-dioxygenase OS=Xanthomonas oryza... [more]
HGD_PSEPF6.488e-4858.64Homogentisate 1,2-dioxygenase OS=Pseudomonas fluor... [more]
HGD_BURTA1.107e-4753.94Homogentisate 1,2-dioxygenase OS=Burkholderia thai... [more]
HGD_RHIEC1.445e-4756.52Homogentisate 1,2-dioxygenase OS=Rhizobium etli (s... [more]
HGD_RALEH1.445e-4755.83Homogentisate 1,2-dioxygenase OS=Ralstonia eutroph... [more]
HGD_BURCJ1.445e-4753.61Homogentisate 1,2-dioxygenase OS=Burkholderia cepa... [more]
HGD_BORPD1.445e-4757.14Homogentisate 1,2-dioxygenase OS=Bordetella petrii... [more]
HGD_SINMW1.888e-4756.52Homogentisate 1,2-dioxygenase OS=Sinorhizobium med... [more]
HGD_RHILW1.888e-4755.90Homogentisate 1,2-dioxygenase OS=Rhizobium legumin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185673 ID=CN185673; Name=CN185673; organism=Citrus sinensis; type=EST; length=814bp
GGCCCCCTTTTTTTTAGCATAAAGGACACACACCATACATATACACATTT
TTTAAAATTCCTTTTACATCAATTATATATGTACATCCAAGTTTTTATCA
CTACTTAGTACATTCACAAACACACAAACAAAAGCTATATATAACCCAAT
CATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTGTTTATAAATA
CTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTGGGGACCAAATCAGG
CGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTCCCCATCGCTT
TCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATCCAATCCAGCA
CTGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCCCAAGGGCAGA
TTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGTATCAGTGATC
TTGTATGGCCCAGCCTTGCTTCCACGTGCAATGGTGGCCTCATATGTCTT
CGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTCGCACCACCTG
GGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTATCAGACCCATA
AACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGAATGTATGCTC
TGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGCAATGCCACAC
CAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGATGGATCACCG
TGATCCACTAAAACAGTGTTGAAAGGACAGAACTTACTGAGATCATACTT
ATATGGTACCATAA
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