CN185673

Overview
NameCN185673
Unique NameCN185673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_XANC5 (Homogentisate 1,2-dioxygenase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 89/161 (55.28%), Postives = 112/161 (69.57%), Query Frame = -3 
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PY+YDL +F    ++  DH DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I DTMAFMFE+  + R    AL +     DY QCW GLR+ F
Sbjct:  271 PYRYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIADTMAFMFETRAVLRPTQQALNAAHRQADYQQCWSGLRAAF 430
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_XANAC (Homogentisate 1,2-dioxygenase OS=Xanthomonas axonopodis pv. citri GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 89/161 (55.28%), Postives = 112/161 (69.57%), Query Frame = -3 
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PY+YDL +F    ++  DH DPSI TVLT+P+D  G A +DF IFPPRWLVA+HTFRPP++HRN  SEFMGL+ G Y+AKA+GF PGGASLH+CM+ HGPD  T++   ++     P  I DTMAFMFE+  + R    AL +     DY QCW GLR+ F
Sbjct:  290 PYRYDLRRFNTIGSISFDHPDPSIFTVLTSPSDTHGTANMDFAIFPPRWLVAQHTFRPPWFHRNVASEFMGLVHGVYDAKAEGFAPGGASLHNCMSGHGPDAATFDKA-SQADLTRPDVIADTMAFMFETRAVLRPTQQALSAAHRQADYQQCWSGLRAAF 449
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RALPJ (Homogentisate 1,2-dioxygenase OS=Ralstonia pickettii (strain 12J) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 88/163 (53.99%), Postives = 114/163 (69.94%), Query Frame = -3 
Query:  324 MVPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 812
            + PYKYDL  F    ++  DH DPSI  VL +P+  PGV  +DFVIFPPRWL AE+TFRPP++HRN  SEFMGLI+G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +      P+K+  TMAFMFE+  + R   +A ES  +   Y++CW GL+ HF
Sbjct:  282 LAPYKYDLRLFNTIGSISYDHPDPSIFLVLQSPSATPGVDTIDFVIFPPRWLAAENTFRPPWFHRNVASEFMGLIQGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKA-SNSDTTKPHKVDATMAFMFETPAVIRPTRFAAESAQLQAKYFECWQGLKKHF 443
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURPS (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 88/165 (53.33%), Postives = 118/165 (71.52%), Query Frame = -3 
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y++CW GL+ HF+ E+
Sbjct:  286 PYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURP1 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1710b) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 88/165 (53.33%), Postives = 118/165 (71.52%), Query Frame = -3 
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y++CW GL+ HF+ E+
Sbjct:  286 PYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURP0 (Homogentisate 1,2-dioxygenase OS=Burkholderia pseudomallei (strain 1106a) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 88/165 (53.33%), Postives = 118/165 (71.52%), Query Frame = -3 
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y++CW GL+ HF+ E+
Sbjct:  286 PYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURMS (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain SAVP1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 88/165 (53.33%), Postives = 118/165 (71.52%), Query Frame = -3 
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y++CW GL+ HF+ E+
Sbjct:  286 PYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURMA (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 88/165 (53.33%), Postives = 118/165 (71.52%), Query Frame = -3 
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y++CW GL+ HF+ E+
Sbjct:  286 PYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURM9 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10229) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 88/165 (53.33%), Postives = 118/165 (71.52%), Query Frame = -3 
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y++CW GL+ HF+ E+
Sbjct:  286 PYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449
[Close]
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURM7 (Homogentisate 1,2-dioxygenase OS=Burkholderia mallei (strain NCTC 10247) GN=hmgA PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.465e-47
Identity = 88/165 (53.33%), Postives = 118/165 (71.52%), Query Frame = -3 
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   +  + + P K+ DTMAFMFE+  + R   +AL++  +  +Y++CW GL+ HF+ E+
Sbjct:  286 PYKYDLRHFNTIGSISYDHPDPSIFLVLQSQSDTPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGVYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASSIDT-SKPNKVGDTMAFMFETRTLIRPTRFALDTAQLQANYFECWQGLKKHFNPEQ 449
The following BLAST results are available for this feature:
BLAST of CN185673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_XANC52.465e-4755.28Homogentisate 1,2-dioxygenase OS=Xanthomonas campe... [more]
HGD_XANAC2.465e-4755.28Homogentisate 1,2-dioxygenase OS=Xanthomonas axono... [more]
HGD_RALPJ2.465e-4753.99Homogentisate 1,2-dioxygenase OS=Ralstonia pickett... [more]
HGD_BURPS2.465e-4753.33Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURP12.465e-4753.33Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURP02.465e-4753.33Homogentisate 1,2-dioxygenase OS=Burkholderia pseu... [more]
HGD_BURMS2.465e-4753.33Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURMA2.465e-4753.33Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURM92.465e-4753.33Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]
HGD_BURM72.465e-4753.33Homogentisate 1,2-dioxygenase OS=Burkholderia mall... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185673 ID=CN185673; Name=CN185673; organism=Citrus sinensis; type=EST; length=814bp
GGCCCCCTTTTTTTTAGCATAAAGGACACACACCATACATATACACATTT
TTTAAAATTCCTTTTACATCAATTATATATGTACATCCAAGTTTTTATCA
CTACTTAGTACATTCACAAACACACAAACAAAAGCTATATATAACCCAAT
CATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTGTTTATAAATA
CTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTGGGGACCAAATCAGG
CGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTCCCCATCGCTT
TCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATCCAATCCAGCA
CTGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCCCAAGGGCAGA
TTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGTATCAGTGATC
TTGTATGGCCCAGCCTTGCTTCCACGTGCAATGGTGGCCTCATATGTCTT
CGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTCGCACCACCTG
GGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTATCAGACCCATA
AACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGAATGTATGCTC
TGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGCAATGCCACAC
CAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGATGGATCACCG
TGATCCACTAAAACAGTGTTGAAAGGACAGAACTTACTGAGATCATACTT
ATATGGTACCATAA
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