CN185673

Overview
NameCN185673
Unique NameCN185673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHIME (Homogentisate 1,2-dioxygenase OS=Rhizobium meliloti GN=hmgA PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.220e-47
Identity = 91/161 (56.52%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F P   +L DH DPSI TVLTAP+ + G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M  HGPD   +E   A   +  P K+ +TMAFMFE+    ++  +A E   +  DY  CW GL   F
Sbjct:  288 PYKYDLKTFSPVGAILFDHPDPSIFTVLTAPSGEEGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIYGRYDAKEEGFVPGGMSLHNMMLAHGPDFSGFEK--ASNGELKPVKLDNTMAFMFETRFPQQLTTFAAELDTLQDDYMDCWSGLERKF 446          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSEU2 (Homogentisate 1,2-dioxygenase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=hmgA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.220e-47
Identity = 94/165 (56.97%), Postives = 116/165 (70.30%), Query Frame = -3
Query:  315 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYE 809
            VPYKYDL +F    TV  DH DPSI TVLT+P    G A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GF+PGGASLH+CM+ HGPD  T E  IA   K  P++I +TMAFMFE+  + R    AL+ P +  DY  CW  +   F+ E
Sbjct:  270 VPYKYDLRRFNTIGTVSYDHPDPSIFTVLTSPGAIHGQANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIDGAYDAKAEGFMPGGASLHNCMSAHGPDNVTAEKAIAAELK--PHRIDNTMAFMFETGKVLRPSRHALDCPQLQTDYDACWKDMARTFTQE 432          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RALSO (Homogentisate 1,2-dioxygenase OS=Ralstonia solanacearum GN=hmgA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.492e-47
Identity = 88/161 (54.66%), Postives = 113/161 (70.19%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL  EH+FRPP++HRN  SEFMGLI+G Y+AKA+GF+PGGASLH+CMT HGPD +T+E   +      P+K+  TMAFMFE+  + R   +A ES  +   Y++CW GL+ HF
Sbjct:  284 PYKYDLRLFNTIGSISYDHPDPSIFLVLQSVSDTPGVDAIDFVIFPPRWLAMEHSFRPPWFHRNIASEFMGLIQGVYDAKAEGFVPGGASLHNCMTGHGPDAETFEKA-SHADTTQPHKVEATMAFMFETRGVIRPTRFAAESAQLQARYFECWQGLKKHF 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSESM (Homogentisate 1,2-dioxygenase OS=Pseudomonas syringae pv. tomato GN=hmgA PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.492e-47
Identity = 94/167 (56.29%), Postives = 116/167 (69.46%), Query Frame = -3
Query:  309 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEEA 809
            VPY YDL +F    TV  DH DPSI TVLT+P    G A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GF+PGG+SLH+CM+ HGPD  T E  IA   K  P+KI +TMAFMFE+  + R    AL  P +  DY  CW G+   F+ E +
Sbjct:  270 VPYTYDLRRFNTIGTVSYDHPDPSIFTVLTSPGAVHGQANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIDGAYDAKAEGFMPGGSSLHNCMSAHGPDNITAEKAIAADLK--PHKIENTMAFMFETGKVLRPSLHALACPQLQADYDACWNGMARTFNKESS 434          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BURVG (Homogentisate 1,2-dioxygenase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=hmgA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.173e-47
Identity = 87/165 (52.73%), Postives = 115/165 (69.70%), Query Frame = -3
Query:  312 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYEE 806
            PYKYDL  F    ++  DH DPSI  VL + +D PGV  +DFVIFPPRWL AE TFRPP++HRN  SEFMGL+ G Y+AKA+GF+PGGASLH+CM+ HGPD  T+E   A  +   P+K+  TMAFMFE+  + R   +AL++  +  DY++CW  +  HF+ E+
Sbjct:  280 PYKYDLRLFNTIGSISYDHPDPSIFLVLQSQSDSPGVDAIDFVIFPPRWLAAEDTFRPPWFHRNVASEFMGLVHGAYDAKAEGFVPGGASLHNCMSGHGPDADTFEKASAIDT-TRPHKVDATMAFMFETRTLIRPTRYALDTAQLQADYFECWQRIEKHFNPEQ 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHOP5 (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisA53) GN=hmgA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.224e-46
Identity = 89/161 (55.28%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F P   +  DH DPSI TVLTAP++ PG A +DFVIFP RW+VA++TFRPP+YH N MSEFMGLI G Y+AK  GF+PGGASLH+ M PHGPD + ++   A   +  P K+T TMAFMFE+    R+  +A  S  +  DY  CW GL   F
Sbjct:  285 PYKYDLRTFSPVGAIGFDHPDPSIFTVLTAPSETPGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFVPGGASLHNMMLPHGPDREAFDH--ASNGELKPTKLTGTMAFMFETRYPQRVTEYAATSGLLQPDYADCWTGLEKRF 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHIL3 (Homogentisate 1,2-dioxygenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=hmgA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.224e-46
Identity = 88/161 (54.66%), Postives = 110/161 (68.32%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            P+KYDL  F P   +  DH DPSI +VLTAP++  G A +DFVIFPPRWLVAEHTFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M PHGPD   +E   A  ++  P K+  TMAFMFE+    ++  +A E   +  +Y +CW GL   F
Sbjct:  288 PFKYDLRTFSPVGAIRFDHPDPSIFSVLTAPSEDAGTANVDFVIFPPRWLVAEHTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGISLHNMMLPHGPDALAFEK--ASNTELKPVKLDHTMAFMFETRYAQQLTKYAAELETLQDNYLECWDGLERKF 446          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_PSE14 (Homogentisate 1,2-dioxygenase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=hmgA PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.726e-46
Identity = 94/165 (56.97%), Postives = 114/165 (69.09%), Query Frame = -3
Query:  315 VPYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFSYE 809
            V YKYDL +F    TV  DH DPSI TVLT+P    G A +DFVIFPPRW+VAE+TFRPP++HRN M+EFMGLI G Y+AKA+GF+PGGASLH+CM+ HGPD  T E  IA   K  P+KI +TMAFMFE+  + R    AL  P +  DY  CW  +   F+ E
Sbjct:  270 VAYKYDLRRFNTIGTVSYDHPDPSIFTVLTSPGAAHGQANIDFVIFPPRWMVAENTFRPPWFHRNLMNEFMGLIDGAYDAKAEGFMPGGASLHNCMSAHGPDNVTAEKAIAAELK--PHKIENTMAFMFETGKVLRPSRHALGCPQLQADYDACWNDMTRTFNKE 432          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHOPT (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain TIE-1) GN=hmgA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.649e-46
Identity = 87/161 (54.04%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  + P   +  DH DPSI TVLT+P++ PG A +DFVIFP RW+VA++TFRPP+YH N MSEFMGLI G Y+AK  GF+PGGASLH+ M PHGPD + ++   A   +  P K+T TMAFMFE+    R+  +A  S  +  DY  CW GL   F
Sbjct:  285 PYKYDLRTYSPVGAIGFDHPDPSIFTVLTSPSETPGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFVPGGASLHNMMLPHGPDREAFDH--ASNGELKPVKLTGTMAFMFETRYPQRVTEYAASSGLLQDDYADCWNGLEKRF 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHOPA (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris GN=hmgA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.649e-46
Identity = 87/161 (54.04%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  + P   +  DH DPSI TVLT+P++ PG A +DFVIFP RW+VA++TFRPP+YH N MSEFMGLI G Y+AK  GF+PGGASLH+ M PHGPD + ++   A   +  P K+T TMAFMFE+    R+  +A  S  +  DY  CW GL   F
Sbjct:  285 PYKYDLRTYSPVGAIGFDHPDPSIFTVLTSPSETPGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFVPGGASLHNMMLPHGPDREAFDH--ASNGELKPVKLTGTMAFMFETRYPQRVTEYAASSGLLQDDYADCWNGLEKRF 443          
The following BLAST results are available for this feature:
BLAST of CN185673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_RHIME3.220e-4756.52Homogentisate 1,2-dioxygenase OS=Rhizobium melilot... [more]
HGD_PSEU23.220e-4756.97Homogentisate 1,2-dioxygenase OS=Pseudomonas syrin... [more]
HGD_RALSO5.492e-4754.66Homogentisate 1,2-dioxygenase OS=Ralstonia solanac... [more]
HGD_PSESM5.492e-4756.29Homogentisate 1,2-dioxygenase OS=Pseudomonas syrin... [more]
HGD_BURVG7.173e-4752.73Homogentisate 1,2-dioxygenase OS=Burkholderia viet... [more]
HGD_RHOP51.224e-4655.28Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHIL31.224e-4654.66Homogentisate 1,2-dioxygenase OS=Rhizobium legumin... [more]
HGD_PSE142.726e-4656.97Homogentisate 1,2-dioxygenase OS=Pseudomonas syrin... [more]
HGD_RHOPT4.649e-4654.04Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOPA4.649e-4654.04Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185673 ID=CN185673; Name=CN185673; organism=Citrus sinensis; type=EST; length=814bp
GGCCCCCTTTTTTTTAGCATAAAGGACACACACCATACATATACACATTT
TTTAAAATTCCTTTTACATCAATTATATATGTACATCCAAGTTTTTATCA
CTACTTAGTACATTCACAAACACACAAACAAAAGCTATATATAACCCAAT
CATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTGTTTATAAATA
CTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTGGGGACCAAATCAGG
CGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTCCCCATCGCTT
TCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATCCAATCCAGCA
CTGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCCCAAGGGCAGA
TTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGTATCAGTGATC
TTGTATGGCCCAGCCTTGCTTCCACGTGCAATGGTGGCCTCATATGTCTT
CGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTCGCACCACCTG
GGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTATCAGACCCATA
AACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGAATGTATGCTC
TGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGCAATGCCACAC
CAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGATGGATCACCG
TGATCCACTAAAACAGTGTTGAAAGGACAGAACTTACTGAGATCATACTT
ATATGGTACCATAA
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