CN185673

Overview
NameCN185673
Unique NameCN185673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length814
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_NITHX (Homogentisate 1,2-dioxygenase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hmgA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.036e-45
Identity = 87/161 (54.04%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F P   +  DH DPSI TVLT+P++  G A +DFVIFP RW+VAE+TFRPP+YH N MSEFMGLI G Y+AK  GF+PGG SLH+CM PHGPD + ++   A  ++  P K+T T+AFMFE+    R+  +A  S  +  DY  CW GL   F
Sbjct:  285 PYKYDLRTFSPIGAIGFDHPDPSIFTVLTSPSEIAGTANIDFVIFPERWVVAENTFRPPWYHMNVMSEFMGLIYGVYDAKPQGFVPGGISLHNCMLPHGPDREAFDH--ASNTELKPVKLTGTLAFMFETRFPQRVTEYAATSDALQDDYADCWQGLERRF 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_LEGPH (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=hmgA PE=3 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 2.307e-45
Identity = 87/162 (53.70%), Postives = 111/162 (68.52%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 806
            PY YDLS F   NTV  DH DPSI TVLT+ ++ PGV+ LDFVIFPPRW+VAEHTFRPPY+HRN M+E MGL+ G Y+AK +GF+PGG S+H+CMTPHGPD ++YE   ++  K       +++AFMFE+    ++   A   P    DY  CW G +  FS
Sbjct:  257 PYCYDLSLFNTINTVSFDHPDPSIFTVLTSESEIPGVSNLDFVIFPPRWMVAEHTFRPPYFHRNYMNELMGLVYGEYDAKKEGFIPGGISIHNCMTPHGPDYESYEIAASQDLKP---NYINSLAFMFETKDYWQVTEQAYRHPSRQMDYLNCWQGFKIEFS 415          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_LEGPA (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Paris) GN=hmgA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.307e-45
Identity = 87/162 (53.70%), Postives = 111/162 (68.52%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 806
            PY YDLS F   NTV  DH DPSI TVLT+ ++ PGV+ LDFVIFPPRW+VAEHTFRPPY+HRN M+E MGL+ G Y+AK +GF+PGG S+H+CMTPHGPD ++YE   ++  K       +++AFMFE+    ++   A   P    DY  CW G +  FS
Sbjct:  257 PYCYDLSLFNTINTVSFDHPDPSIFTVLTSESEIPGVSNLDFVIFPPRWMVAEHTFRPPYFHRNYMNELMGLVYGEYDAKKEGFIPGGISIHNCMTPHGPDYESYEIAASQDLKP---NYINSLAFMFETKDYWQVTEQAYRHPSRQMDYLNCWQGFKIEFS 415          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_LEGPL (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Lens) GN=hmgA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.014e-45
Identity = 87/162 (53.70%), Postives = 111/162 (68.52%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 806
            PY YDLS F   NTV  DH DPSI TVLT+ ++ PGV+ LDFVIFPPRW+VAEHTFRPPY+HRN M+E MGL+ G Y+AK +GF+PGG S+H+CMTPHGPD ++YE   ++  K       +++AFMFE+    ++   A   P    DY  CW G +  FS
Sbjct:  257 PYCYDLSLFNTINTVSFDHPDPSIFTVLTSESEIPGVSNLDFVIFPPRWMVAEHTFRPPYFHRNYMNELMGLVYGEYDAKKEGFIPGGISIHNCMTPHGPDYESYEIAASQDLKP---NYINSLAFMFETKDYWQVTEQAYRHPSRQIDYLNCWQGFKIEFS 415          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_LEGPC (Homogentisate 1,2-dioxygenase OS=Legionella pneumophila (strain Corby) GN=hmgA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.014e-45
Identity = 87/162 (53.70%), Postives = 111/162 (68.52%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 806
            PY YDLS F   NTV  DH DPSI TVLT+ ++ PGV+ LDFVIFPPRW+VAEHTFRPPY+HRN M+E MGL+ G Y+AK +GF+PGG S+H+CMTPHGPD ++YE   ++  K       +++AFMFE+    ++   A   P    DY  CW G +  FS
Sbjct:  257 PYCYDLSLFNTINTVSFDHPDPSIFTVLTSESEIPGVSNLDFVIFPPRWMVAEHTFRPPYFHRNYMNELMGLVYGEYDAKKEGFIPGGISIHNCMTPHGPDYESYEIAASQDLKP---NYINSLAFMFETKDYWQVTEQAYRHPSRQVDYLNCWQGFKVEFS 415          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_BRAJA (Homogentisate 1,2-dioxygenase OS=Bradyrhizobium japonicum GN=hmgA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.014e-45
Identity = 87/161 (54.04%), Postives = 106/161 (65.84%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F P   +  DH DPSI TVLT+P++  G A +DFVIFP RW+VA++TFRPP+YH N MSEFMGLI G Y+AK  GF+PGG SLH+CM PHGPD   +E   A   +  P K+T TMAFMFE+    R+   A  +  +  DY  CW GL   F
Sbjct:  285 PYKYDLRTFSPVGAIGFDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVADNTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFVPGGMSLHNCMLPHGPDRDAFEH--ASNGELKPVKLTGTMAFMFETRYPQRVTAHAANASTLQDDYADCWKGLEKRF 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHOP2 (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain HaA2) GN=hmgA PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 5.141e-45
Identity = 87/161 (54.04%), Postives = 108/161 (67.08%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F P   +  DH DPSI TVLT+P++  G A +DFVIFP RW+VAE+TFRPP+YH N MSEFMGLI G Y+AK  GF+PGGASLH+ M PHGPD + ++   A   +  P K+T TMAFMFE+    R+  +A  +  +  DY  CW GL   F
Sbjct:  285 PYKYDLRTFSPVGAIGFDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVAENTFRPPWYHMNIMSEFMGLICGVYDAKPQGFVPGGASLHNMMLPHGPDREAFDH--ASNGELKPVKLTGTMAFMFETRYPQRVTEYAATAGTLQDDYADCWRGLEKRF 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHOPB (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisB18) GN=hmgA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.145e-44
Identity = 87/161 (54.04%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F P   +  DH DPSI TVLT+P++  G A +DFVIFP RW+VAE+TFRPP+YH N MSEFMGLI G Y+AK  GFLPGGASLH+ M PHGPD + ++   A  ++  P K+  T+AFMFE+    R+   A  S  +  DY +CW GL+  F
Sbjct:  285 PYKYDLRTFSPVGAIGFDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVAENTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFLPGGASLHNMMLPHGPDREAFDH--ASNAELKPVKLEGTLAFMFETRYPQRVTVHAATSSTLQADYAECWRGLQKRF 443          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHILO (Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN=hmgA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.145e-44
Identity = 87/162 (53.70%), Postives = 107/162 (66.05%), Query Frame = -3
Query:  321 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHFS 806
            PYKYDL+ F P   +L DH DPSI TVLTAP+ + G A +DFVIFPPRWLVAE TFRPP+YHRN MSEFMGLI G Y+AK +GF+PGG SLH+ M  HGPD   +E   A  +   P K+ +TMAFMFE+     +  +  E      +Y  CW  L+  F+
Sbjct:  290 PYKYDLATFSPVGAILFDHPDPSIFTVLTAPSGEEGTANIDFVIFPPRWLVAEDTFRPPWYHRNIMSEFMGLIHGQYDAKEEGFVPGGISLHNLMLAHGPDAPGFEK--ASRADLKPVKLDNTMAFMFETRFPQMLTRYGAELETRQDNYIDCWADLKKRFN 449          
BLAST of CN185673 vs. ExPASy Swiss-Prot
Match: HGD_RHOPS (Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas palustris (strain BisB5) GN=hmgA PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.551e-44
Identity = 86/161 (53.42%), Postives = 106/161 (65.84%), Query Frame = -3
Query:  324 PYKYDLSKFCPFNTVLVDHGDPSINTVLTAPTDKPGVALLDFVIFPPRWLVAEHTFRPPYYHRNCMSEFMGLIRGGYEAKADGFLPGGASLHSCMTPHGPDTKTYEATIARGSKAGPYKITDTMAFMFESCLIPRICPWALESPFMDHDYYQCWIGLRSHF 806
            PYKYDL  F P   +  DH DPSI TVLT+P++  G A +DFVIFP RW+VAE+TFRPP+YH N MSEFMGLI G Y+AK  GF PGGASLH+ M PHGPD + ++   A   +  P K+T TMAFM E+    R+  +A  +  +  DY  CW GL   F
Sbjct:  285 PYKYDLRTFSPVGAIGFDHPDPSIFTVLTSPSETAGTANIDFVIFPERWMVAENTFRPPWYHMNIMSEFMGLIYGVYDAKPQGFAPGGASLHNMMLPHGPDREAFDH--ASNGELKPVKLTGTMAFMLETRYPQRVTEYAATADTLQDDYADCWRGLEKRF 443          
The following BLAST results are available for this feature:
BLAST of CN185673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
HGD_NITHX1.036e-4554.04Homogentisate 1,2-dioxygenase OS=Nitrobacter hambu... [more]
HGD_LEGPH2.307e-4553.70Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPA2.307e-4553.70Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPL3.014e-4553.70Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_LEGPC3.014e-4553.70Homogentisate 1,2-dioxygenase OS=Legionella pneumo... [more]
HGD_BRAJA3.014e-4554.04Homogentisate 1,2-dioxygenase OS=Bradyrhizobium ja... [more]
HGD_RHOP25.141e-4554.04Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHOPB1.145e-4454.04Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]
HGD_RHILO1.145e-4453.70Homogentisate 1,2-dioxygenase OS=Rhizobium loti GN... [more]
HGD_RHOPS2.551e-4453.42Homogentisate 1,2-dioxygenase OS=Rhodopseudomonas ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185673 ID=CN185673; Name=CN185673; organism=Citrus sinensis; type=EST; length=814bp
GGCCCCCTTTTTTTTAGCATAAAGGACACACACCATACATATACACATTT
TTTAAAATTCCTTTTACATCAATTATATATGTACATCCAAGTTTTTATCA
CTACTTAGTACATTCACAAACACACAAACAAAAGCTATATATAACCCAAT
CATACATGTGTGATTAATCGCAAATTTTTTACCTTGGGTGTTTATAAATA
CTCGCCCATCAATTACCGGAGAAGCTCTCGTGCCTGGGGACCAAATCAGG
CGCACAATATCCTCTGTTCCATGTCCCACATTGTCAACTCCCCATCGCTT
TCATTATCTGCTTCTTCATACGAAAAATGAGATCTTAATCCAATCCAGCA
CTGATAATAATCATGATCCATAAAGGGAGACTCGAGAGCCCAAGGGCAGA
TTCTAGGAATTAAACATGATTCAAACATAAAAGCCATAGTATCAGTGATC
TTGTATGGCCCAGCCTTGCTTCCACGTGCAATGGTGGCCTCATATGTCTT
CGTATCAGGACCATGGGGAGTCATACAACTATGAAGGCTCGCACCACCTG
GGAGAAACCCATCAGCTTTTGCCTCGTATCCACCACGTATCAGACCCATA
AACTCACTCATACAATTTCTATGGTAGTATGGTGGTCGGAATGTATGCTC
TGCAACCAACCATCGAGGAGGAAATATGACAAAGTCAAGCAATGCCACAC
CAGGTTTATCAGTTGGTGCTGTCAGAACAGTATTTATAGATGGATCACCG
TGATCCACTAAAACAGTGTTGAAAGGACAGAACTTACTGAGATCATACTT
ATATGGTACCATAA
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