CN185671

Overview
NameCN185671
Unique NameCN185671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2850 contig Csv1_Contig2850:53..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5A2_CHICK (Eukaryotic translation initiation factor 5A-2 OS=Gallus gallus GN=EIF5A2 PE=1 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 2.984e-43
Identity = 85/142 (59.86%), Postives = 111/142 (78.17%), Query Frame = -2
Query:  316 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 741
            DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIFNGKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP + +L  +I+  F + +D+ +SV  AM EE   A+K
Sbjct:   11 DAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLP-EGDLGKEIEGKFNANEDVQISVISAMNEECAVAIK 150          
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5A_DROME (Eukaryotic translation initiation factor 5A OS=Drosophila melanogaster GN=eIF-5A PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 6.649e-43
Identity = 85/154 (55.19%), Postives = 118/154 (76.62%), Query Frame = -2
Query:  316 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 777
            M++ +  FE+  D+GAS T+P Q   +RKNG++++K RPCK+VE+STSKTGKHGHAK H VGIDIF+ KK EDI PS+HN DVP+V R D QLI IS+D F++L+TE+G+ ++DL++P  E L  Q++  F+SGKDL+ +V  A GEE + A+K
Sbjct:    1 MAELDDQFET-TDSGASTTYPMQCSALRKNGFVMLKSRPCKIVEMSTSKTGKHGHAKVHMVGIDIFSNKKYEDICPSTHNMDVPNVKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGE-LGEQLRLDFDSGKDLLCTVLKACGEECVIAIK 152          
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5A1_RABIT (Eukaryotic translation initiation factor 5A-1 OS=Oryctolagus cuniculus GN=EIF5A PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.934e-42
Identity = 82/142 (57.75%), Postives = 112/142 (78.87%), Query Frame = -2
Query:  316 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 741
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++SG++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDSGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5A1_RAT (Eukaryotic translation initiation factor 5A-1 OS=Rattus norvegicus GN=Eif5a PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 7.351e-42
Identity = 81/142 (57.04%), Postives = 111/142 (78.17%), Query Frame = -2
Query:  316 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 741
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5A1_MOUSE (Eukaryotic translation initiation factor 5A-1 OS=Mus musculus GN=Eif5a PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.351e-42
Identity = 81/142 (57.04%), Postives = 111/142 (78.17%), Query Frame = -2
Query:  316 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 741
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5A1_HUMAN (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 7.351e-42
Identity = 81/142 (57.04%), Postives = 111/142 (78.17%), Query Frame = -2
Query:  316 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 741
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5A1_BOVIN (Eukaryotic translation initiation factor 5A-1 OS=Bos taurus GN=EIF5A PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 7.351e-42
Identity = 81/142 (57.04%), Postives = 111/142 (78.17%), Query Frame = -2
Query:  316 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 741
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5A_NEUCR (Eukaryotic translation initiation factor 5A OS=Neurospora crassa GN=tif-51 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 4.765e-41
Identity = 88/160 (55.00%), Postives = 109/160 (68.12%), Query Frame = -2
Query:  301 DMSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALKDIGPK 780
            D +  EH F+S  DAGAS T+P Q   +RK G++VIK RPCK+V++STSKTGKHGHAK H V IDIF GKKLED+ PS+HN DVP+V RTDYQ   I ED F+ L+  NG  K D+++P  E L  +I+   E GKD  V VQ AMGEE    +K+   K
Sbjct:    6 DDAQHEHTFDS-VDAGASATYPMQCSALRKGGHVVIKNRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLCPSTHNMDVPNVKRTDYQFSYIDED-FLVLIDSNGEEKRDVKMPEGE-LAKRIEKLEEEGKDFFVGVQTAMGEEAAIDVKEASNK 162          
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5AL_HUMAN (Eukaryotic translation initiation factor 5A-1-like OS=Homo sapiens GN=EIF5AL1 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 5.268e-40
Identity = 79/142 (55.63%), Postives = 108/142 (76.06%), Query Frame = -2
Query:  316 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLVVSVQCAMGEEQINALK 741
            DAGAS TFP Q   +RKNG++V+KG PCK+VE+S SKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DG++SLL ++G   +DLRLP + +L  +I+  ++ G++++++V  AM EE   A+K
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGWPCKIVEMSASKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVPEDLRLP-EGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK 150          
BLAST of CN185671 vs. ExPASy Swiss-Prot
Match: IF5A1_CHICK (Eukaryotic translation initiation factor 5A-1 OS=Gallus gallus GN=EIF5A1 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 3.415e-39
Identity = 76/126 (60.32%), Postives = 100/126 (79.37%), Query Frame = -2
Query:  364 DAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQIKDGFESGKDLV 741
            DAGAS TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI PS+HN DVP++ R D+QLI I +DGF+SLL ++G  ++DLRLP  E L  +I+  ++ G++++
Sbjct:   11 DAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRCDFQLIGI-QDGFLSLLQDSGEVREDLRLPEGE-LGREIEQKYDCGEEII 134          
The following BLAST results are available for this feature:
BLAST of CN185671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
IF5A2_CHICK2.984e-4359.86Eukaryotic translation initiation factor 5A-2 OS=G... [more]
IF5A_DROME6.649e-4355.19Eukaryotic translation initiation factor 5A OS=Dro... [more]
IF5A1_RABIT1.934e-4257.75Eukaryotic translation initiation factor 5A-1 OS=O... [more]
IF5A1_RAT7.351e-4257.04Eukaryotic translation initiation factor 5A-1 OS=R... [more]
IF5A1_MOUSE7.351e-4257.04Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A1_HUMAN7.351e-4257.04Eukaryotic translation initiation factor 5A-1 OS=H... [more]
IF5A1_BOVIN7.351e-4257.04Eukaryotic translation initiation factor 5A-1 OS=B... [more]
IF5A_NEUCR4.765e-4155.00Eukaryotic translation initiation factor 5A OS=Neu... [more]
IF5AL_HUMAN5.268e-4055.63Eukaryotic translation initiation factor 5A-1-like... [more]
IF5A1_CHICK3.415e-3960.32Eukaryotic translation initiation factor 5A-1 OS=G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001L05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185671 ID=CN185671; Name=CN185671; organism=Citrus sinensis; type=EST; length=838bp
TTTTTTTTTCCCGAAGCTGTAAATTGCATGTTTGAAACAACCAAAAGGTG
CTTCCATGTGTATATACAGTCACGTTGGCGGATACAACTTCTGCACACCG
AGAACAACCATGTTTCAACTTTCAAGCAATCAAACAGAATAAAAATACTG
TCGATAGAAAACAATTAATAATATGGTAAGAGTCATTTTATATGAAATGA
TGGCATTCATCTTGAAACCGGACACCAGTAAAGCTACACTACTATCCACC
TTCCCACAGCTTTCAGCAATCTGCATTCTCGATCAAGCAAAAGTCTTTTA
CTTGGGGCCAATGTCCTTCAGGGCATTGATCTGCTCCTCTCCCATAGCAC
ACTGAACTGAGACAACCAGATCTTTCCCACTCTCAAATCCATCCTTGATC
TGTGAAAGCAGATTTTCATCAGTTGGAAGTCTCAGGTCATCCTTGGTATT
GCCATTCTCAGTCAGCAGGCTAACAAATCCATCCTCAGAGATATCAATCA
GCTGGTAGTCAGTGCGAGTGACATGAGGAACATCACAGTTGTGGGAAGAG
GGAACAATATCCTCAAGCTTCTTGCCATTGAAGATGTCAATTCCTACAAA
GTGACACTTAGCATGACCGTGCTTTCCAGTCTTGGAAGTTGAAACCTCAA
CAACCTTGCAAGGACGACCTTTGATGACGATATAACCGTTTTTGCGGATG
GTTCCGGCCTGCTGAGGAAATGTCTTGGAGGCGCCGGCGTCGGCCTTCGA
CTCAAAGTGGTGCTCTTCGTCCGACATATCGTCTGGTTCCTGCGATTCAC
AATTAGAGCTTCGACAACCAAATTTTGGTAGAATCGAA
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