CN185660

Overview
NameCN185660
Unique NameCN185660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN185660 vs. ExPASy Swiss-Prot
Match: RBM34_RAT (RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 45/123 (36.59%), Postives = 69/123 (56.10%), Query Frame = -1 
Query:  348 KEAAALREMQAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 713
            +E AA + +Q    +     +   ++A+  AS+   D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   DAV  AL+LN SEL GR+L+V+ +  N   +KQ
Sbjct:  250 EERAAAKALQRNGAQIAEGFRIRVDLASETASR---DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 368
The following BLAST results are available for this feature:
BLAST of CN185660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RBM34_RAT1.997e-1136.59RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185660 ID=CN185660; Name=CN185660; organism=Citrus sinensis; type=EST; length=773bp
TTTTTTTTTTTTTTTTTCCAATTCAACAAGAAATTCCCTTTAGTTCATGC
TAATAATGTTTGATCATTCAAGACATCAATAATAAACATGTAGCTAATAA
ATCCTTTGTTTCCTATCTAAAGCAGGATACATAAGCACCATGATACATTG
AATTTTTCAGTTTATGGATGATCCACAAATGTCACCATCTTCAACAGGAG
CACAATCTGCTAGTAGTAGGGCATGTACCTCATTGGCCTTCTGAACCTCG
GAACCTTCCCATATCCATAAGGTGAATAGAAATAAGGAGGTACATAGGGC
CTCCTGCCTCGGTACCCCATGTAAGGATTGAAACGCCTTGGACGATACTG
CTTCATACCAGGGACATTTGTCCTCTTAGGTAAAACCTTCAGTTGACGGC
CATGTAATTCAGACTCATTCAACTGGAGAGCCTCTTGAACAGCATCTATT
TCAAGGAATTCCACATAAGCAAAACCCTTTGGCTGGCCAAACTTGTCTGT
CAAAATAGTTACCCTGTTTACAGTACCACAGGATTGGAAATGTTGCTGCA
CTTCTTCAGGAGTGCATGCATAATCTACATTGCCAACAAAGACTGATCGT
GAATCTGCCTCTTCTTTGCTTGCTTGATTAGCAGCCACATTAGCAGGATC
TTGAGCAGCGCCCATCTCTTTCTCGACCTTAGCTTGCATCTCACGAAGAG
CAGCAGCTTCCTTCCTCCATCTCCTTCAACCGCTTCTTCATCTCATCCAG
CTCCTTGACGGCGTCGTCATCGG
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