CN185653

Overview
NameCN185653
Unique NameCN185653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185653 vs. ExPASy Swiss-Prot
Match: CP26A_MOUSE (Cytochrome P450 26A1 OS=Mus musculus GN=Cyp26a1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 54/231 (23.38%), Postives = 109/231 (47.19%), Query Frame = 3
Query:    3 GSLGLPFLGETLQLIAAY*TENPEPFIDVRVKRFGSIFTTHIFGEPTVFSADPETNRFILQNEGKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFANSSIIRDHLLVDIDRLVRLHMDSWTD----RVLLMEEANKITFELTVKQLMSFDP-----NEWTESLRKEYVLVIEGFFTVPLPIFSTTYRRAIQARTKVAEALSLVVRHRRKESESGERKNDMLEAL 668
            G++G PF GETLQ++          F+ ++ +++G I+ TH+FG PTV     +  R IL  E +L    +P S+  +LG   L  +  S HK+   + M   +   ++ ++LV I   V   ++ W       +L+  E  ++ F + ++ L+  +P      E  + L + +  +    F++P+ +  +   R ++AR  +   +   +R + +  ++ E      +AL
Sbjct:   47 GTMGFPFFGETLQMVL-----QRRKFLQMKRRKYGFIYKTHLFGRPTVRVMGADNVRRILLGEHRLVSVHWPASVRTILGAGCLSNLHDSSHKQRKKVIMQAFSREALQCYVLV-IAEEVSSCLEQWLSCGERGLLVYPEVKRLMFRIAMRILLGCEPGPAGGGEDEQQLVEAFEEMTRNLFSLPIDVPFSGLYRGVKARNLIHARIEENIRAKIRRLQATEPDGGCKDAL 271          
BLAST of CN185653 vs. ExPASy Swiss-Prot
Match: CP26A_HUMAN (Cytochrome P450 26A1 OS=Homo sapiens GN=CYP26A1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 55/235 (23.40%), Postives = 111/235 (47.23%), Query Frame = 3
Query:    3 GSLGLPFLGETLQLIAAY*TENPEPFIDVRVKRFGSIFTTHIFGEPTVFSADPETNRFILQNEGKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFANSSIIRDHLLVDIDRLVRLHMDSWTD----RVLLMEEANKITFELTVKQLMSFDP-----NEWTESLRKEYVLVIEGFFTVPLPIFSTTYRRAIQARTKVAEALSLVVRHR---RKESESGERKNDMLEALL 671
            G++G PF GETLQ++          F+ ++ +++G I+ TH+FG PTV     +  R IL  E +L    +P S+  +LG   L  +  S HK+   + M   +   +  ++ V I   V   ++ W       +L+  E  ++ F + ++ L+  +P      +  + L + +  +    F++P+ +  +   R ++AR  +   +   +R +    + SE+G+   D L+ L+
Sbjct:   47 GTMGFPFFGETLQMVL-----QRRKFLQMKRRKYGFIYKTHLFGRPTVRVMGADNVRRILLGEHRLVSVHWPASVRTILGSGCLSNLHDSSHKQRKKVIMRAFSREALECYVPV-ITEEVGSSLEQWLSCGERGLLVYPEVKRLMFRIAMRILLGCEPQLAGDGDSEQQLVEAFEEMTRNLFSLPIDVPFSGLYRGMKARNLIHARIEQNIRAKICGLRASEAGQGCKDALQLLI 275          
BLAST of CN185653 vs. ExPASy Swiss-Prot
Match: C88A1_MAIZE (Cytochrome P450 88A1 OS=Zea mays GN=CYP88A1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 59/234 (25.21%), Postives = 104/234 (44.44%), Query Frame = 3
Query:    3 GSLGLPFLGETLQLIAAY*TENPEPFIDVRVKRFG--SIFTTHIFGEPTVFSADPETNRFILQNEGKLFECSYPGSISNLLGKHSLLLMKGSLHKRMHSLTMSFANSSIIRDHLLVDIDRLVRLHMDSWTDR---VLLMEEANKITFELTVKQLMSFDPNEWTESLRKEYVLVIEGFFTVPLPIFSTTYRRAIQARTKVAEALSLVVRHRRKESESGERKN--DMLEALLAGDD 683
            G +G P +G     + A+ +  P+ FI   V+RFG   ++ + +F  PTV     E  + +L ++   F   +P +   L+G  S + M    H+R+  LT +  N        L  IDR V   + +W D    V  + E  ++TF++ V+  +       T +L + Y  +  G   + + +    YR A++AR ++   L  V+  RR     G      DM++ L+   D
Sbjct:   75 GEMGWPLVGGMWAFLRAFKSGKPDAFIASFVRRFGRTGVYRSFMFSSPTVLVTTAEGCKQVLMDDDA-FVTGWPKATVALVGPRSFVAMPYDEHRRIRKLTAAPINGFDALTGYLPFIDRTVTSSLRAWADHGGSVEFLTELRRMTFKIIVQIFLGGADQATTRALERSYTELNYGMRAMAINLPGFAYRGALRARRRLVAVLQGVLDERRAARAKGVSGGGVDMMDRLIEAQD 307          
The following BLAST results are available for this feature:
BLAST of CN185653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
CP26A_MOUSE3.572e-1423.38Cytochrome P450 26A1 OS=Mus musculus GN=Cyp26a1 PE... [more]
CP26A_HUMAN4.665e-1423.40Cytochrome P450 26A1 OS=Homo sapiens GN=CYP26A1 PE... [more]
C88A1_MAIZE7.958e-1425.21Cytochrome P450 88A1 OS=Zea mays GN=CYP88A1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185653 ID=CN185653; Name=CN185653; organism=Citrus sinensis; type=EST; length=693bp
AGGGAAGCCTCGGCCTGCCCTTTCTTGGGGAGACCTTGCAACTCATAGCC
GCATACTAAACTGAGAACCCGGAGCCCTTCATTGACGTGAGGGTGAAGCG
GTTCGGTTCGATATTCACAACCCACATATTTGGCGAGCCGACGGTGTTCT
CCGCCGACCCGGAAACGAACCGGTTCATCTTGCAGAATGAAGGGAAGTTG
TTCGAGTGCAGCTACCCCGGCTCGATATCGAACCTTCTGGGGAAGCACTC
GTTGCTGCTGATGAAGGGGAGTCTTCATAAGAGAATGCATTCTTTAACCA
TGAGCTTCGCTAATTCGTCGATCATTAGAGACCATCTTTTGGTCGACATA
GACCGGCTGGTCCGGCTCCATATGGATTCCTGGACCGACCGGGTCCTTCT
CATGGAAGAAGCCAACAAGATAACATTTGAGTTAACAGTGAAGCAGCTGA
TGAGTTTTGATCCGAATGAATGGACCGAGAGTCTCAGAAAAGAATACGTG
CTCGTCATCGAAGGCTTCTTCACTGTTCCTTTACCCATCTTCTCCACCAC
CTATCGCAGAGCTATACAAGCGAGAACAAAGGTGGCGGAGGCACTGAGCT
TGGTAGTGAGGCATAGGAGAAAGGAGAGTGAATCCGGGGAGCGAAAGAAC
GATATGCTGGAGGCACTTTTGGCCGGAGACGATGGCTTTTCCG
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