CN185648

Overview
NameCN185648
Unique NameCN185648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_YERPP (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 1 
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 672
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   63 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 239
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_YERPN (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadJ PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 1 
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 672
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   36 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 212
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_YERPE (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis GN=fadJ PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 1 
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 672
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   36 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 212
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadJ PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 1 
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 672
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   36 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 212
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 1 
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 672
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   36 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 212
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SHIFL (Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.257e-16
Identity = 61/209 (29.19%), Postives = 99/209 (47.37%), Query Frame = 1 
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +   E  +   +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+ +A F++ E  L I  D G + RLP I+      E+ +TGRR    EA   G+V+RV   + EL    R +A+ +   +PL
Sbjct:    8 TRNGSILEITLDRP-KANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPTIVNEMVMTGRRMGAEEALRWGIVNRVVSQA-ELMDNARELAQQLVNSAPL 202
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALTI (Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=caiD PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.947e-16
Identity = 61/209 (29.19%), Postives = 101/209 (48.33%), Query Frame = 1 
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL +  R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQS-ELMESARELAQQLVNSAPL 202
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALTY (Carnitinyl-CoA dehydratase OS=Salmonella typhimurium GN=caiD PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 61/209 (29.19%), Postives = 101/209 (48.33%), Query Frame = 1 
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL +  R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMESARELAQQLVNSAPL 202
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALSV (Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 61/209 (29.19%), Postives = 101/209 (48.33%), Query Frame = 1 
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL +  R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMESARELAQQLVNSAPL 202
[Close]
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALNS (Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254) GN=caiD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 61/209 (29.19%), Postives = 101/209 (48.33%), Query Frame = 1 
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL +  R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMESARELAQQLVNSAPL 202
The following BLAST results are available for this feature:
BLAST of CN185648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
FADJ_YERPP2.257e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPN2.257e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPE2.257e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPA2.257e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERP32.257e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
CAID_SHIFL2.257e-1629.19Carnitinyl-CoA dehydratase OS=Shigella flexneri GN... [more]
CAID_SALTI2.947e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella typhi GN=... [more]
CAID_SALTY3.849e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella typhimuri... [more]
CAID_SALSV3.849e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella schwarzen... [more]
CAID_SALNS3.849e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella newport (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185648 ID=CN185648; Name=CN185648; organism=Citrus sinensis; type=EST; length=695bp
AGGCTTGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATC
GATAAAAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATC
TTAACCGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAA
TTCCCTAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCAT
CGTCCTCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAA
CACTAAGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTC
TCCGAGAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGC
CATCGAGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTA
TCGGAGGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCA
AAAGATGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGA
TCTCGGGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGA
TGGAATTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAG
TTGGGTCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGG
TGTCAGGCTTGTTGCCGAGGGAATTGCTGAAAAATCTCCTCTTGC
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