CN185648

Overview
NameCN185648
Unique NameCN185648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALHS (Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476) GN=caiD PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.849e-16
Identity = 61/209 (29.19%), Postives = 101/209 (48.33%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL +  R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMESARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 58/187 (31.02%), Postives = 91/187 (48.66%), Query Frame = 1
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 672
            N L  EF  E    L+ +  + ++  +VL SG  D F +G D+  L +     T+TD  + S++              +E    PV+A+I+GAC+GGG+++  AC  R CS +      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV      S  L   V +   G
Sbjct:   29 NTLRSEFGPEISDVLAEIKADTSIKGLVLVSGKKDSFVAGADISMLDACE---TATDAKQLSQQGHV-------VFNELESLPIPVVAAINGACLGGGLELALACHKRVCSLNPKTMMGVPEVQLGLLPGGGGTQRLPRLVGVTTALDMMLTGKQLRPKQALKMGLVDDAVPESILLRTAVEMALAG 205          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_ESCF3 (Fatty acid oxidation complex subunit alpha OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadJ PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 53/181 (29.28%), Postives = 84/181 (46.41%), Query Frame = 1
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGV 654
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +        +    R  ++   +I  L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  +   S  L   V
Sbjct:   29 NTLKAEFAAQVRAILKEIRENKEIRGVVFISAKADNFIAGADINMIDHCNTAMEAETLARQGQQLMAEIHALP----------VPVIAAIHGACLGGGLELALACHGRICTDDPKTILGLPEVQLGLLPGSGGTQRLPRLVGLSTALDMILTGKQLRPGQALKSGLVDEIVPQSILLQAAV 199          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHA_HUMAN (Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 53/183 (28.96%), Postives = 99/183 (54.10%), Query Frame = 1
Query:   85 VIYLYLNRPSQR-NALSREFFTEFPKALSSLDQNPNV-NAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            V  + +N P+ + N LS+E  +EF + ++ +  +  + +A+++S     F +G D+  L++     T  +  + S++ +R        V  +E+  KP++A+I+G+C+GGG+++  +C  R  +KD        EV L      G  QRLP +VG   A+++ LTGR      AK++GLV ++
Sbjct:   49 VAVVRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACK---TLQEVTQLSQEAQR-------IVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQL 221          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CRTL_DICDI (3-hydroxybutyryl-CoA dehydratase-like protein, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0271866 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 66/231 (28.57%), Postives = 110/231 (47.62%), Query Frame = 1
Query:   10 FFTSAKQMEESYKSIKIEGKTPNSR---VIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            FF+S+  +E     + +E    N +   +  + LN+P Q NAL+ E   ++ K + +L ++ ++  +VL+G G  F +G DL  L   T  T   ++ R  E+F R   +++           P+I++I+GA IG G  +  A DIR  S  A   +    L I   +G    +  IVG   A  + L+     G EA+ LGLV +   +   L   + L AE I++ S +
Sbjct:   17 FFSSSTTVETKQPLVLLEKHLVNGKYTGIQIVKLNKPKQLNALTFEMGVDYKKVVDTLAEDKDLKCVVLTGEGKAFSAGGDLDFLIERTKDTPENNQ-RIMERFYRTFLYIRSLPV-------PIISAINGAAIGAGFCLALATDIRVVSNKAPVGLTFTKLGIHPGMGVTHSITNIVGQDVASYMLLSSDIIKGDEAQRLGLVLKSVESDQVLPTALNL-AETISKNSTI 238          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALPK (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain AKU_12601) GN=caiD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 61/209 (29.19%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQS-ELMDSARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALPC (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi C (strain RKS4594) GN=caiD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 61/209 (29.19%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQS-ELMDSARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALPA (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A GN=caiD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 61/209 (29.19%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQS-ELMDSARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALG2 (Carnitinyl-CoA dehydratase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=caiD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 61/209 (29.19%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGSGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMDSARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALEP (Carnitinyl-CoA dehydratase OS=Salmonella enteritidis PT4 (strain P125109) GN=caiD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 61/209 (29.19%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGSGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMDSARELAQQLVNSAPL 202          
The following BLAST results are available for this feature:
BLAST of CN185648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
CAID_SALHS3.849e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella heidelber... [more]
FADJ_SHEHH5.027e-1631.02Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ESCF35.027e-1629.28Fatty acid oxidation complex subunit alpha OS=Esch... [more]
ECHA_HUMAN5.027e-1628.96Trifunctional enzyme subunit alpha, mitochondrial ... [more]
CRTL_DICDI5.027e-1628.573-hydroxybutyryl-CoA dehydratase-like protein, mit... [more]
CAID_SALPK5.027e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALPC5.027e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALPA5.027e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALG25.027e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella gallinaru... [more]
CAID_SALEP5.027e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella enteritid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185648 ID=CN185648; Name=CN185648; organism=Citrus sinensis; type=EST; length=695bp
AGGCTTGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATC
GATAAAAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATC
TTAACCGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAA
TTCCCTAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCAT
CGTCCTCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAA
CACTAAGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTC
TCCGAGAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGC
CATCGAGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTA
TCGGAGGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCA
AAAGATGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGA
TCTCGGGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGA
TGGAATTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAG
TTGGGTCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGG
TGTCAGGCTTGTTGCCGAGGGAATTGCTGAAAAATCTCCTCTTGC
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