CN185648

Overview
NameCN185648
Unique NameCN185648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALCH (Carnitinyl-CoA dehydratase OS=Salmonella choleraesuis GN=caiD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 61/209 (29.19%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQS-ELMDSARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALA4 (Carnitinyl-CoA dehydratase OS=Salmonella agona (strain SL483) GN=caiD PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 61/209 (29.19%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQS-ELMDSARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_SALPK (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A (strain AKU_12601) GN=fadJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 55/193 (28.50%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLV-AEGIAEKS 687
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ L G++    +A + GLV  V   +  L+  V L   E +A+++
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINIIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILIGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKERLAQRT 211          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_SALPA (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A GN=fadJ PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 55/193 (28.50%), Postives = 93/193 (48.19%), Query Frame = 1
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLV-AEGIAEKS 687
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ L G++    +A + GLV  V   +  L+  V L   E +A+++
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINIIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILIGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKERLAQRT 211          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALPB (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 61/209 (29.19%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMDSARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALDC (Carnitinyl-CoA dehydratase OS=Salmonella dublin (strain CT_02021853) GN=caiD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 61/209 (29.19%), Postives = 100/209 (47.85%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+  +      +A  +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDAKTSFAMGEAFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMDSARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_SALAR (Carnitinyl-CoA dehydratase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiD PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 60/209 (28.71%), Postives = 99/209 (47.37%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T N  ++ + L+RP + NA+         +A  S   +P++   +++G G+ F S G DLK  +           G F+             +T +    KPVIA+++G   GGG ++  A D   C+  A F++ E  L I  D G + RLP I+      ++ +TGRR    EA   G+V+RV  + +EL    R +A  + + +PL
Sbjct:    8 TRNGPILEITLDRP-KANAIDARTSFAMGEAFLSFRDDPHLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTELFDLNKPVIAAVNGYAFGGGFELALAADFIICADHASFALPEAKLGIVPDSGGVLRLPKILPPAIVNDMVMTGRRMTAEEALRWGVVNRVV-SPHELLDSARELARQLVQSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHA6_MYCLE (Probable enoyl-CoA hydratase echA6 OS=Mycobacterium leprae GN=echA6 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.120e-15
Identity = 57/189 (30.16%), Postives = 91/189 (48.15%), Query Frame = 1
Query:   64 GKTPNSRVIYLYLNRPSQRNALSREFFTEFPKAL---SSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            G T    V+ + L RP +RNAL+ +   +  +A+   SS D   +   IVL+G G  FC+G DL   +   D+       R  E  R     + DAV        PVI +I+G  IG G+ +   CD+R  + DA+F        +  D  +++RL ++VG+G A  + LT  +     A + G+ +R+
Sbjct:    3 GITQAEGVMTIELQRPERRNALNSQLIEKLREAVQKASSADSEVSTRVIVLTGQGTVFCAGADLSGDAFAADYPD-----RLIELHR-----VMDAVPM------PVIGAINGPAIGAGLQLAMQCDLRVVAPDAYFQFPTSKYGLALDNWSIRRLSSLVGHGRARAMLLTAEKLTADIALQTGMANRI 175          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_VIBVY (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadJ PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 55/206 (26.70%), Postives = 99/206 (48.06%), Query Frame = 1
Query:   67 KTPNSRVIYLYLNRPSQR-NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 672
            K     + +L ++ P+++ N L   F  E     + L  +  +  +++ S   D+F +G D++ L +      +    R  ++  + +  L            PV+A+IHG C+GGG+++  ACD R CS D      + EV L +    G  QRLP ++G   +++L LTG++    +AK+LG+V      +  LD   + V +G
Sbjct:   10 KIDEQNIAWLGIDVPNEKMNTLQAAFADEMKAIFAQLKDSSGLKGLIVHSLKPDNFVAGADVRMLEACKTAPEAEALARQGQELFQQLSDLP----------YPVVAAIHGPCLGGGLELALACDFRVCSDDDATRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAKKLGVVDACVPQTILLDVAKQFVEKG 205          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_VIBHB (Fatty acid oxidation complex subunit alpha OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=fadJ PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.463e-15
Identity = 61/217 (28.11%), Postives = 108/217 (49.77%), Query Frame = 1
Query:   34 EESYKSIKIEGKTPNSRVIYLYLNRPSQR-NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFC--SKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 672
            E+   S+KI+       + +L ++ P+++ N L   F  E  +  + L     V  +V+ S   D+F +G D++ L + T   T+++    +++ +   + L D          PV+A+IHG C+GGG+++  ACD R C  S      + EV L +    G  QRLP ++G   +++L LTG++    +AK+LG+V      +  LD     V +G
Sbjct:    3 EQKAFSLKID----EQNIAWLAIDVPNEKMNTLQAAFADEMKEIFAQLKDTSGVKGMVIHSLKPDNFVAGADVRMLEACT---TASEAEALAKQGQELFQQLSDLPY-------PVVAAIHGPCLGGGLELALACDYRVCTDSDKTRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAKKLGVVDACVPETVLLDIAKMHVEKG 205          
The following BLAST results are available for this feature:
BLAST of CN185648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
CAID_SALCH5.027e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella choleraes... [more]
CAID_SALA45.027e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella agona (st... [more]
FADJ_SALPK6.566e-1628.50Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPA6.566e-1628.50Fatty acid oxidation complex subunit alpha OS=Salm... [more]
CAID_SALPB6.566e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALDC6.566e-1629.19Carnitinyl-CoA dehydratase OS=Salmonella dublin (s... [more]
CAID_SALAR6.566e-1628.71Carnitinyl-CoA dehydratase OS=Salmonella arizonae ... [more]
ECHA6_MYCLE1.120e-1530.16Probable enoyl-CoA hydratase echA6 OS=Mycobacteriu... [more]
FADJ_VIBVY1.463e-1526.70Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_VIBHB1.463e-1528.11Fatty acid oxidation complex subunit alpha OS=Vibr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185648 ID=CN185648; Name=CN185648; organism=Citrus sinensis; type=EST; length=695bp
AGGCTTGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATC
GATAAAAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATC
TTAACCGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAA
TTCCCTAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCAT
CGTCCTCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAA
CACTAAGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTC
TCCGAGAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGC
CATCGAGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTA
TCGGAGGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCA
AAAGATGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGA
TCTCGGGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGA
TGGAATTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAG
TTGGGTCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGG
TGTCAGGCTTGTTGCCGAGGGAATTGCTGAAAAATCTCCTCTTGC
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