CN185648

Overview
NameCN185648
Unique NameCN185648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHP_MOUSE (Peroxisomal bifunctional enzyme OS=Mus musculus GN=Ehhadh PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 57/185 (30.81%), Postives = 82/185 (44.32%), Query Frame = 1
Query:   67 KTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            + P+S  +    N P   NA+S    TE    L     +  V AIV+ G  D+FC+G D+    S T  T                  L   V  I+R +KPV+A+I G  +GGG+++   C  R  +  A     EV L I       Q LP +VG   A++L  +GR     EA +LG++  V
Sbjct:    6 RLPHSLAMIRLCNPPV--NAISPTVITEVRNGLQKASLDHTVRAIVICGANDNFCAGADIHGFKSPTGLT------------------LGSLVDEIQRYQKPVVAAIQGVALGGGLELALGCHYRIANAKARVGFPEVMLGILPGARGTQLLPRVVGVPVALDLITSGRHISTDEALKLGILDVV 170          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHP_DANRE (Peroxisomal bifunctional enzyme OS=Danio rerio GN=ehhadh PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 54/169 (31.95%), Postives = 75/169 (44.38%), Query Frame = 1
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRF--LQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            NALS        K +     +P V A+V+ G    FC G D++                   +F   +R   L   + AIE   KPV+A+I G  +GGG ++   C  R     A   + EV L I    G  QRLP ++G   A+EL  TGR     EA +LG+V +V
Sbjct:   22 NALSSAVRHAISKTMERALSDPKVTAVVICGENGRFCGGADIR-------------------EFAGPLRGPPLVPLLDAIEAGEKPVVAAIEGVALGGGFELALVCHYRIAHYKARLGLPEVTLGILPAAGGTQRLPRLIGIPAALELITTGRHVSAQEALKLGMVDQV 171          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_IDILO (Fatty acid oxidation complex subunit alpha OS=Idiomarina loihiensis GN=fadJ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 52/181 (28.73%), Postives = 85/181 (46.96%), Query Frame = 1
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDA--FFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGV 654
            N L   F  E    ++ L+ + +V  +V +SG    F +G D+  +    +   +    R            Q     IE+   PV+A+I+GAC+GGG+++  AC +R C+ ++     + EV L +    G  QRLP +VG    + + LTG+     +A + GLV+ V   S  LD  V
Sbjct:   29 NTLKDSFAEEVGSLMNRLESDDSVKGVVFISGKPGSFIAGADINMIDGCENAVDAESLARKG----------QAMFDRIEQLNVPVVAAINGACLGGGLELAMACHVRVCTDNSKTALGLPEVKLGLLPGSGGTQRLPELVGVQQGLTMILTGKELRAKQALKAGLVTEVVPQSILLDVAV 199          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CDYL2_HUMAN (Chromodomain Y-like protein 2 OS=Homo sapiens GN=CDYL2 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.617e-14
Identity = 60/202 (29.70%), Postives = 95/202 (47.03%), Query Frame = 1
Query:   19 SAKQMEESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVF 624
            S +Q E + +   I  +        L  ++ S  NAL+ E   E  +AL +   + +   ++LS  G  FCSG+D   L        S+DR + S +    IR   D V A  + +KP++ +I+G  +G G  I+  CDI + S+ A+F      + +T    +    P I+G   A E+   GR+    EA   GLVS+VF
Sbjct:  239 SVRQNESNCRFRDIVVRKEEGFTHILLSSQTSDNNALTPEIMKEVRRALCNAATDDS-KLLLLSAVGSVFCSGLDYSYLIG----RLSSDRRKESTRIAEAIR---DFVKAFIQFKKPIVVAINGPALGLGASILPLCDIVWASEKAWFQTPYATIRLTPAGCSSYTFPQILGVALANEMLFCGRKLTAQEACSRGLVSQVF 432          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: PAAG_ECOLI (Probable enoyl-CoA hydratase paaG OS=Escherichia coli (strain K12) GN=paaG PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 51/179 (28.49%), Postives = 84/179 (46.93%), Query Frame = 1
Query:   85 VIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            V+ L LNRP + N+ + E   +  + L  ++++  +  ++L+G G  FC+G DL    +V     + D G   E      RF    V  + +  KPVI +++G   G G  +    DI   ++ A F +    L +  D G    LP + G   AM LAL G +    +A E G++ +V
Sbjct:   13 VMTLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLND-RNVDPTGPAPDLGMSVE------RFYNPLVRRLAKLPKPVICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARAMGLALLGNQLSAEQAHEWGMIWQV 184          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CDYL_MOUSE (Chromodomain Y-like protein OS=Mus musculus GN=Cdyl PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 62/209 (29.67%), Postives = 101/209 (48.33%), Query Frame = 1
Query:    1 RLAFFTSAKQMEESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGID-LKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVF 624
            RL F  S +Q E +Y+   I  +  +     L   + S+ N+L+ E   E   ALS+   + +   ++LS  G  FC G+D +  +  +TD     DR R S K    IR   + V    + +KP+I +++G  IG G  I+  CD+ + ++ A+F         + D  +    P I+G  +A E+  +GR+    EA   GLVS+VF
Sbjct:  322 RLRF--SVRQTESAYRYRDIVVRKQDGFTHILLSTKSSENNSLNPEVMKEVQSALSTAAADDS-KLVLLSAVGSVFCCGLDFIYFIRRLTD-----DRKRESTKMADAIR---NFVNTFIQFKKPIIVAVNGPAIGLGASILPLCDVVWANEKAWFQTPYTTFGQSPDGCSTVMFPKIMGGASANEMLFSGRKLTAQEACGKGLVSQVF 519          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: CAID_CITK8 (Carnitinyl-CoA dehydratase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.112e-14
Identity = 58/209 (27.75%), Postives = 98/209 (46.89%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCS-GIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL 693
            T +  ++ + L+RP + NA+  +   E  +   +   +P +   +++G G+ F S G DLK  +           G F+             +T I    KPVIA+++G   GGG ++  A D   C+ +A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV      +D   R +A+ +   +PL
Sbjct:    8 TRHGPILEITLDRP-KANAIDAKTSFEMGEVFLNFRDDPELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFA------------GLTEIFDLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMLMTGRRMDAEEALRWGIVNRVVSQQALMD-SARELAQQLVNSAPL 202          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: HIBCH_CHICK (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Gallus gallus GN=HIBCH PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 60/198 (30.30%), Postives = 97/198 (48.99%), Query Frame = 1
Query:  100 LNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSP 690
            LNRP   NALS +   +    + + +Q+P    I++ GTG+  FC+G D++ ++       +  R  F E++R D         AI  C+KP +A I G  +GGGV +      R  ++   F++ E  + +  D+G    LP + G    + LALTG R  G +  + G+ +  F  S +L +   L  + IA KSP
Sbjct:   50 LNRPKVLNALSFKMIQQIYPQIKAWEQDPETFLIIIKGTGEKAFCAGGDVRAIADAGKAGDTMTRDYFREEYRLD--------NAIGTCKKPYVALIDGITMGGGVGLSVHGHFRVATEKTVFAMPETAIGLFPDVGGGYFLPRLSGKIGHL-LALTGFRLKGRDVLKAGIATH-FVESGKLPE---LEKDLIALKSP 234          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHEB5 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.603e-14
Identity = 55/217 (25.35%), Postives = 92/217 (42.40%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE  T    AL S+ Q+ N+ A+VL+ + D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + + A D R     A   + E  L I    G   RLP ++G  NA+E   TG+     +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLTSLDAALDSIKQDSNIKALVLTSSKDTFIVGADITEFL-----------GLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: PECI_MOUSE (Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus musculus GN=Peci PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.705e-14
Identity = 57/198 (28.79%), Postives = 92/198 (46.46%), Query Frame = 1
Query:   70 TPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTS-YELDQGVRL 660
            T    +  +  NRP+++NA+S + + +   AL +   +  V A V +GTGD++CSG DL   +S T        G   E        L+D V +     KP++A ++G  +G  V ++   D  F S  A F      L  + +  +    P ++G   A E+ L G++    EA   GLV+ VF  S +E +   RL
Sbjct:  143 TSEDGITKITFNRPTKKNAISFQMYRDIILALKNASTDNTVMA-VFTGTGDYYCSGNDLTNFTSAT--------GGIEEAASNGAVLLRDFVNSFIDFPKPLVAVVNGPAVGISVTLLGLFDAVFASDRATFHTPFSQLGQSPEACSSYTFPKMMGSAKAAEMLLFGKKLTAREAWAQGLVTEVFPESTFETEVWTRL 331          
The following BLAST results are available for this feature:
BLAST of CN185648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
ECHP_MOUSE9.481e-1530.81Peroxisomal bifunctional enzyme OS=Mus musculus GN... [more]
ECHP_DANRE9.481e-1531.95Peroxisomal bifunctional enzyme OS=Danio rerio GN=... [more]
FADJ_IDILO1.238e-1428.73Fatty acid oxidation complex subunit alpha OS=Idio... [more]
CDYL2_HUMAN1.617e-1429.70Chromodomain Y-like protein 2 OS=Homo sapiens GN=C... [more]
PAAG_ECOLI2.112e-1428.49Probable enoyl-CoA hydratase paaG OS=Escherichia c... [more]
CDYL_MOUSE2.112e-1429.67Chromodomain Y-like protein OS=Mus musculus GN=Cdy... [more]
CAID_CITK82.112e-1427.75Carnitinyl-CoA dehydratase OS=Citrobacter koseri (... [more]
HIBCH_CHICK2.758e-1430.303-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
FADB_SHEB53.603e-1425.35Fatty acid oxidation complex subunit alpha OS=Shew... [more]
PECI_MOUSE4.705e-1428.79Peroxisomal 3,2-trans-enoyl-CoA isomerase OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185648 ID=CN185648; Name=CN185648; organism=Citrus sinensis; type=EST; length=695bp
AGGCTTGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATC
GATAAAAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATC
TTAACCGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAA
TTCCCTAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCAT
CGTCCTCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAA
CACTAAGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTC
TCCGAGAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGC
CATCGAGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTA
TCGGAGGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCA
AAAGATGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGA
TCTCGGGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGA
TGGAATTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAG
TTGGGTCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGG
TGTCAGGCTTGTTGCCGAGGGAATTGCTGAAAAATCTCCTCTTGC
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