CN185648

Overview
NameCN185648
Unique NameCN185648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: MFPA_CUCSA (Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.145e-14
Identity = 54/191 (28.27%), Postives = 86/191 (45.03%), Query Frame = 1
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAI-ERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSP 690
            N+LS +       +     +  +V AIV++G    F  G D+     +         G+  +   R+I    + +T I E  RKP +A+I G  +GGG+++  AC  R  +  A   + E+ L I    G  QRLP +VG   A+E+ LT +   G EA  LGLV  +      ++   R   E +  + P
Sbjct:   29 NSLSFDVLFSLRDSYEQALRRDDVKAIVVTGAKGKFSGGFDITAFGVLQG-------GKGEQPNVRNISI--EMITDIFEAARKPAVAAIDGLALGGGLEVAMACHARISTPTAQLGLPELQLGIIPGFGGTQRLPRLVGLSKALEMMLTSKPIKGQEAHSLGLVDAIVPPEELINTARRWALEILERRRP 210          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHESW (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain W3-18-1) GN=fadB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 55/217 (25.35%), Postives = 90/217 (41.47%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE       AL S+ QN N+ A+VL+ + D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + + A D R     A   + E  L I    G   RLP ++G  NA+E   TG      +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQNSNIKALVLTSSKDTFIVGADITEFL-----------GLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWISTGNDQRAEDALKVGAVDAVVAPEALEAAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHEPC (Fatty acid oxidation complex subunit alpha OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.026e-14
Identity = 55/217 (25.35%), Postives = 90/217 (41.47%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE       AL S+ QN N+ A+VL+ + D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + + A D R     A   + E  L I    G   RLP ++G  NA+E   TG      +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQNSNIKALVLTSSKDTFIVGADITEFL-----------GLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWISTGNDQRAEDALKVGAVDAVVAPEALEAAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADJ_VIBF1 (Fatty acid oxidation complex subunit alpha OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadJ PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.048e-13
Identity = 49/184 (26.63%), Postives = 99/184 (53.80%), Query Frame = 1
Query:   76 NSRVIYLYLNRPSQR-NALSREFFTEFPKALSSLD-QNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLV 612
            + ++ +L ++ P+++ N L   F  +  + L  ++ Q  ++  +V+ SG  D+F +G D+  +++  +   +++    +EK +   + ++D   A        +A+IHG C+GGG+++  ACD R CS D      + EV L +    G  QRLP ++G   ++++ LTG++     A +LG+V
Sbjct:   13 DEQIAWLTIDVPNEKMNTLQAAFAEQVTQVLDEIEEQQAHIKGLVIQSGKPDNFIAGADINMIANCQN---ASEAQALAEKGQHLFQRIEDLPFA-------TVAAIHGPCLGGGLELALACDYRVCSDDNKTKLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDIILTGKQLRPKTALKLGVV 186          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHEB8 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS185) GN=fadB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.369e-13
Identity = 54/217 (24.88%), Postives = 91/217 (41.94%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE       AL S+ Q+ N+ A+VL+ + D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + + A D R     A   + E  L I    G   RLP ++G  NA+E   TG+     +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQDSNIKALVLTSSKDTFIVGADITEFL-----------GLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDALKVGAVDSVVAPQALEAAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHEB9 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS195) GN=fadB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.788e-13
Identity = 54/217 (24.88%), Postives = 91/217 (41.94%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE       AL S+ Q+ N+ A+VL+ + D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + + A D R     A   + E  L I    G   RLP ++G  NA+E   TG+     +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQDSNIKALVLTSSKDTFIVGADITEFL-----------GLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRVADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: HIBCH_MOUSE (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Mus musculus GN=Hibch PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 60/202 (29.70%), Postives = 95/202 (47.03%), Query Frame = 1
Query:  100 LNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLG---TLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG-IAEKSP 690
            LNRP   NALS     +    L + +Q+P+   I++ G G   FC+G D+K LS       +  +  F E++  +         AI  C+KP +A I G  +GGGV +      R  ++ + F++ E  + +  D+G    L RL   +GY     LALTG R  G +    G+      T +   + +R++ E  +A KSP
Sbjct:   50 LNRPKFLNALSLNMIRQIYPQLKTWEQDPDTFLIIIKGAGGKAFCAGGDIKALSEAKKARQNLTQDLFREEYILN--------NAIASCQKPYVALIDGITMGGGVGLSVHGQFRVATERSLFAMPETGIGLFPDVGGGYFLPRLQGKLGY----FLALTGYRLKGRDVHRAGI-----ATHFVDSEKLRVLEEELLALKSP 234          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHEB2 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS223) GN=fadB PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 53/217 (24.42%), Postives = 90/217 (41.47%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE       AL S+ Q+ N+ A+VL+ + D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + +   D R     A   + E  L I    G   RLP ++G  NA+E   TG+     +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQDSNIKALVLTSSKDTFIVGADITEFL-----------GLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILTTDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDALKVGAVDAVVAPQALEAAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHP_RAT (Peroxisomal bifunctional enzyme OS=Rattus norvegicus GN=Ehhadh PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.983e-13
Identity = 53/185 (28.65%), Postives = 80/185 (43.24%), Query Frame = 1
Query:   67 KTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            + P+S  +    N P   NA+S     E    L     +  V AIV+ G   +FC+G D+   S+ T                     L   V  I+R +KPV+A+I G  +GGG+++   C  R  +  A   + EV L I       Q LP +VG   A++L  +G+     EA  LG++  V
Sbjct:    6 RLPHSLAMIRLCNPPV--NAVSPTVIREVRNGLQKAGSDHTVKAIVICGANGNFCAGADIHGFSAFTPGLA-----------------LGSLVDEIQRYQKPVLAAIQGVALGGGLELALGCHYRIANAKARVGLPEVTLGILPGARGTQLLPRVVGVPVALDLITSGKYLSADEALRLGILDAV 171          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: MFP_ORYSJ (Peroxisomal fatty acid beta-oxidation multifunctional protein OS=Oryza sativa subsp. japonica GN=MFP PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 1
Query:  157 KALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLV 612
            K   ++D++ +V AIVL+G G  FC G D+   + V  H T       +     D+  ++     +E  +KP +A+I G  +GGG+++   C  R  + +A   + E+ L I    G  QRLP +VG   A+E+ L  +     E KE GLV
Sbjct:   40 KYAEAMDRD-DVKAIVLTGAGGKFCGGFDINVFTEV--HKTG------NVSLMPDVS-VELVSNLMEAGKKPSVAAIQGLALGGGLELTMGCHARISTPEAQLGLPELTLGIIPGFGGTQRLPRLVGLPKAIEMMLQSKFITAKEGKEGGLV 181          
The following BLAST results are available for this feature:
BLAST of CN185648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
MFPA_CUCSA6.145e-1428.27Glyoxysomal fatty acid beta-oxidation multifunctio... [more]
FADB_SHESW8.026e-1425.35Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEPC8.026e-1425.35Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_VIBF11.048e-1326.63Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_SHEB81.369e-1324.88Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEB91.788e-1324.88Fatty acid oxidation complex subunit alpha OS=Shew... [more]
HIBCH_MOUSE3.983e-1329.703-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
FADB_SHEB23.983e-1324.42Fatty acid oxidation complex subunit alpha OS=Shew... [more]
ECHP_RAT3.983e-1328.65Peroxisomal bifunctional enzyme OS=Rattus norvegic... [more]
MFP_ORYSJ5.202e-1331.58Peroxisomal fatty acid beta-oxidation multifunctio... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185648 ID=CN185648; Name=CN185648; organism=Citrus sinensis; type=EST; length=695bp
AGGCTTGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATC
GATAAAAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATC
TTAACCGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAA
TTCCCTAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCAT
CGTCCTCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAA
CACTAAGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTC
TCCGAGAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGC
CATCGAGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTA
TCGGAGGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCA
AAAGATGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGA
TCTCGGGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGA
TGGAATTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAG
TTGGGTCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGG
TGTCAGGCTTGTTGCCGAGGGAATTGCTGAAAAATCTCCTCTTGC
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