CN185648

Overview
NameCN185648
Unique NameCN185648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHESA (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain ANA-3) GN=fadB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 54/217 (24.88%), Postives = 89/217 (41.01%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE       AL S+ Q  N+ A+VL+   D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + + A D R     A   + E  L I    G   RLP ++G  NA+E   TG+     +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQQSNIQALVLTSGKDTFIVGADITEFL-----------GLFAQDDAVLLSWIEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRPEDALKVGAVDAVVAPEALEAAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHEON (Fatty acid oxidation complex subunit alpha OS=Shewanella oneidensis GN=fadB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 54/217 (24.88%), Postives = 88/217 (40.55%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE       AL S+ Q  N+ A+VL+   D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + + A D R     A   + E  L I    G   RLP ++G  NA+E   TG      +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQQSNIQALVLTSGKDTFIVGADITEFL-----------GLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGNEQRAEDALKVGAVDAVVAPEALEVAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH17_MYCPA (Probable enoyl-CoA hydratase echA17 OS=Mycobacterium paratuberculosis GN=echA17 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 57/193 (29.53%), Postives = 90/193 (46.63%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            + S+ +   + ++ +  L ++RP   NALSR+ + E   A   L +  +V A++L G  + F +G D+  L ++        RG  +E   R  R   DAV AI    KP +A+I G  +G G+ +  A D R    +  F   E+   +      L RL  + G   A EL  +GR F   EA  LGL+  +
Sbjct:    7 FVSVVVSDGSRDAGLAMLLVSRPPT-NALSRQVYREVIAAADELGRRDDVAAVILFGGHEIFSAGDDMPELRTL--------RGAEAETAARVRRDAIDAVAAIP---KPTVAAITGYALGAGLTLALAADWRISGDNVKFGATEILAGLVPGGDALARLTRVAGASKAKELVFSGRFFDAEEALALGLIDEM 187          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH17_MYCA1 (Probable enoyl-CoA hydratase echA17 OS=Mycobacterium avium (strain 104) GN=echA17 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 57/193 (29.53%), Postives = 90/193 (46.63%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            + S+ +   + ++ +  L ++RP   NALSR+ + E   A   L +  +V A++L G  + F +G D+  L ++        RG  +E   R  R   DAV AI    KP +A+I G  +G G+ +  A D R    +  F   E+   +      L RL  + G   A EL  +GR F   EA  LGL+  +
Sbjct:    7 FVSVVVSDGSRDAGLAMLLVSRPPT-NALSRQVYREVIAAADELGRRDDVAAVILFGGHEIFSAGDDMPELRTL--------RGAEAETAARVRRDAIDAVAAIP---KPTVAAITGYALGAGLTLALAADWRISGDNVKFGATEILAGLVPGGDALARLTRVAGASKAKELVFSGRFFDAEEALALGLIDEM 187          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH14_MYCTU (Probable enoyl-CoA hydratase echA14 OS=Mycobacterium tuberculosis GN=echA14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 50/182 (27.47%), Postives = 78/182 (42.86%), Query Frame = 1
Query:   76 NSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            +  V  + +N P +RNA++ E   +   A+   + +P+V+A+V++G G  FC+G DL  L +           R           L D   A+  C  P IA+++GA +G G+++  A D+R     A F  +   L +    G    L   VG   A    L G  F    A   GL   V
Sbjct:   12 DKHVALITVNDPDRRNAVTDEMSAQLRAAIQRAEGDPDVHAVVVTGAGKAFCAGADLSALGAGVGDPAEPRLLR-----------LYDGFMAVSSCNLPTIAAVNGAAVGAGLNLALAADVRIAGPAALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMCFDAESAVRHGLALMV 182          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH14_MYCBO (Probable enoyl-CoA hydratase echA14 OS=Mycobacterium bovis GN=echA14 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 50/182 (27.47%), Postives = 78/182 (42.86%), Query Frame = 1
Query:   76 NSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 621
            +  V  + +N P +RNA++ E   +   A+   + +P+V+A+V++G G  FC+G DL  L +           R           L D   A+  C  P IA+++GA +G G+++  A D+R     A F  +   L +    G    L   VG   A    L G  F    A   GL   V
Sbjct:   12 DKHVALITVNDPDRRNAVTDEMSAQLRAAIQRAEGDPDVHAVVVTGAGKAFCAGADLSALGAGVGDPAEPRLLR-----------LYDGFMAVSSCNLPTIAAVNGAAVGAGLNLALAADVRIAGPAALFDARFQKLGLHPGGGATWMLQRAVGPQVARAALLFGMCFDAESAVRHGLALMV 182          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHESR (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-7) GN=fadB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 54/217 (24.88%), Postives = 89/217 (41.01%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE       AL S+ Q  N+ A+VL+   D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + + A D R     A   + E  L I    G   RLP ++G  NA+E   TG+     +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQQSNIQALVLTSGKDTFIVGADITEFL-----------GLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRPEDALKVGAVDAVVAPEALEAAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHESM (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-4) GN=fadB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 54/217 (24.88%), Postives = 89/217 (41.01%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N P   N   RE       AL S+ Q  N+ A+VL+   D F  G D+               G F++     + +++ A     +      P  ++I G  +GGG + + A D R     A   + E  L I    G   RLP ++G  NA+E   TG+     +A ++G V  V          ++++ + +AEK
Sbjct:    3 YQSPTIQVELLEDNIAKLCFNAPGSVNKFDRETLASLDAALDSIKQQSNIQALVLTSGKDTFIVGADITEFL-----------GLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCEAILATDFRIADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRPEDALKVGAVDAVVAPEALEAAAIQMLKDAVAEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHP_CAVPO (Peroxisomal bifunctional enzyme OS=Cavia porcellus GN=EHHADH PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.794e-13
Identity = 50/189 (26.46%), Postives = 83/189 (43.92%), Query Frame = 1
Query:   67 KTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTS 633
            + P+S  +    N P   NA+S        + L     +  +  IV+SG  + FC+G D+   S+     T +  G                V  ++R  KPV+A+I G  +GGG+++   C  R    +A     EV L I       Q LP ++G   A++L  +GR     EA +LG++ +V  ++
Sbjct:    6 RLPHSLALIRLRNPPV--NAISPAVIHGIKEGLQKAMSDYTIKGIVISGANNIFCAGADIHGFSAPLSFGTGSGLGPI--------------VDEMQRYEKPVVAAIQGMALGGGLELSLGCHYRIAHAEARIGFPEVTLGILPGARGTQLLPRLIGVPAALDLITSGRHITAGEALKLGILDKVVNSA 178          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: HIBCH_XENLA (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus laevis GN=hibch PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.874e-13
Identity = 57/200 (28.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  100 LNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAV--TAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSP 690
            LNRP   NAL+     +    L   +++P    +++ G G   FC+G D++ +         TD G+  ++  +D  F ++ +   AI  C+KP +A I G  +GGGV +      R  S+   F++ E  + +  D+G    LP + G    + LALTG R  G + ++ G+ +  F  S +L     L  + +A KSP
Sbjct:   50 LNRPKALNALNLGMIRQIYPQLKLWEEDPETYLVIIKGAGGKAFCAGGDIRAV---------TDAGKVGDRLAQDF-FREEYILNNAIGTCKKPYVAVIDGITMGGGVGLSVHGHFRVASEKTLFAMPETAIGLFPDVGGGYFLPRLTG-KLGLYLALTGFRLKGSDVQKAGIATH-FVESEKLSS---LEQDLVAMKSP 234          
The following BLAST results are available for this feature:
BLAST of CN185648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
FADB_SHESA5.202e-1324.88Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHEON5.202e-1324.88Fatty acid oxidation complex subunit alpha OS=Shew... [more]
ECH17_MYCPA5.202e-1329.53Probable enoyl-CoA hydratase echA17 OS=Mycobacteri... [more]
ECH17_MYCA15.202e-1329.53Probable enoyl-CoA hydratase echA17 OS=Mycobacteri... [more]
ECH14_MYCTU5.202e-1327.47Probable enoyl-CoA hydratase echA14 OS=Mycobacteri... [more]
ECH14_MYCBO5.202e-1327.47Probable enoyl-CoA hydratase echA14 OS=Mycobacteri... [more]
FADB_SHESR6.794e-1324.88Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_SHESM6.794e-1324.88Fatty acid oxidation complex subunit alpha OS=Shew... [more]
ECHP_CAVPO6.794e-1326.46Peroxisomal bifunctional enzyme OS=Cavia porcellus... [more]
HIBCH_XENLA8.874e-1328.503-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0001K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185648 ID=CN185648; Name=CN185648; organism=Citrus sinensis; type=EST; length=695bp
AGGCTTGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATC
GATAAAAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATC
TTAACCGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAA
TTCCCTAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCAT
CGTCCTCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAA
CACTAAGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTC
TCCGAGAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGC
CATCGAGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTA
TCGGAGGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCA
AAAGATGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGA
TCTCGGGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGA
TGGAATTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAG
TTGGGTCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGG
TGTCAGGCTTGTTGCCGAGGGAATTGCTGAAAAATCTCCTCTTGC
back to top