CN185648

Overview
NameCN185648
Unique NameCN185648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_PSYWF (Fatty acid oxidation complex subunit alpha OS=Psychrobacter sp. (strain PRwf-1) GN=fadB PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.752e-12
Identity = 53/186 (28.49%), Postives = 84/186 (45.16%), Query Frame = 1
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIA 678
            N    E   +F +A+S+L++  NV  ++++ +   F +G D+    S  +   +       EK+  DI          E    P +A+I+GA +GGG ++   C+ R     A   + E  L I    G   R P ++G  NA+EL  TG+     EA +LGLV  V       +  V LV + IA
Sbjct:   30 NKFDAETNKQFDEAVSALEKADNVKGLIVTSSKGVFIAGADITEFVSHFNKEAAE-----IEKWIVDIN---GVFNRFEDLPFPKVAAINGAALGGGCEMTLVCEYRVMGDKAQIGLPETQLGIFPGFGGSVRTPRVIGIDNAVELIATGKAQKPAEALKLGLVDAVVAQDDLQEAAVDLVKKCIA 207          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_PSYA2 (Fatty acid oxidation complex subunit alpha OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.512e-12
Identity = 48/186 (25.81%), Postives = 85/186 (45.70%), Query Frame = 1
Query:  121 NALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIA 678
            N    E   +F + +++L++  +V  ++++ +   F +G D      +T+   S  +    E+ +  +  + DA    E    P +A+I+GA +GGG ++   C+ R  S  A   + E  L I    G   R   ++G  NA+EL  TG     L+A +LGLV          D  + LV + I+
Sbjct:   30 NKFDTETNKQFAEVVNALEKADDVKGLIVTSSKGVFIAGAD------ITEFVASFKQSE--EEIKDWVININDAFNRFEDLPFPKVAAINGAALGGGCEMTLVCEYRVMSDKAIIGLPETQLGIFPGFGGTVRSTRVIGIDNALELIATGAPKKALDALKLGLVDATVAADDLQDAAIDLVKKCIS 207          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 47/194 (24.23%), Postives = 80/194 (41.24%), Query Frame = 1
Query:   94 LYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGI 675
            L  + P   N L         KAL  L + PN+  ++L      F  G D+    S+            +EK    + F       +E    P +++I+   +GGG + V A D R  + DA   + E  L I    G   RLP ++G  +A+E+   G+     +A ++GLV  V      +   ++++ + I
Sbjct:   20 LVFSAPGSVNTLDTRTVASLGKALDVLAEQPNLKGLLLRSDKPAFIVGADITEFLSLFAAP--------AEKLHEWLVFANSIFNRLEDLPVPTLSAINSYALGGGCECVLATDFRLATPDARIGLPETKLGIMPGFGGTVRLPRLLGADSALEIIAAGKDVSAADALKVGLVQAVVANEKLIPAAIKMLKQAI 205          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_AERHH (Fatty acid oxidation complex subunit alpha OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.811e-12
Identity = 46/197 (23.35%), Postives = 82/197 (41.62%), Query Frame = 1
Query:   94 LYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            L  + P   N L R       +A+++L Q   +  ++L+   D F  G D+     + D   +   G   +          D  +AIE    P +++I G  +GGG + + + D R     A   + E  L I    G   RLP ++G  NA+E   TG+ +   +A ++G +  V          V+++ + +  K
Sbjct:   20 LRFDAPGSVNKLDRATLLSLSEAIAALQQERELKGLILTSGKDAFIVGADITEFLELFDLPQADLLGWLKKA--------NDIFSAIEDLPVPTLSAIKGHALGGGCETILSTDFRLADTSAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWITTGKDYRADDALKVGAIDAVVAPDALQSAAVQMIKDAVKGK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: YHAR_BACSU (Putative enoyl-CoA hydratase/isomerase yhaR OS=Bacillus subtilis GN=yhaR PE=3 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 45/183 (24.59%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   76 NSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVF 624
            N  V  + LNRP   +AL+ +  +E  +A+     +  +  ++L G+G  F +G D++ ++S  D           ++F+R +  ++     + + +K  IA+IHGA  G G+ +    DI    K+A  ++  + + +  D G    L   +G   A +L  +G++    EA ++GL+   F
Sbjct:    9 NGAVAEIILNRPDAHHALNEQMLSELKEAVEMAAASEAL-IVLLRGSGKGFSAGGDIRMMTSEHD----------PDQFKRLMDTIEAVTLNLYQMKKVTIAAIHGAAAGLGLSLALCADIVLAEKNAVLAMNFIGIGLVPDGGGHYLLKKRIGEAKAKKLIWSGKKLSASEAADMGLLDGTF 180          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH17_MYCTU (Probable enoyl-CoA hydratase echA17 OS=Mycobacterium tuberculosis GN=echA17 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 50/190 (26.32%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLV 612
            + ++ +   + ++ +  L L+RP   NA++R+ + E   A + L +  +V A++L G  + F +G D+  L +++     T             R  Q AV A+    KP +A+I G  +G G+ +  A D R    +  F   E+   +      + RL    G   A EL  +GR F   EA  LGL+
Sbjct:    4 FVNVVVSDGSQDAGLAMLLLSRPPT-NAMTRQVYREVVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAA-----------RIRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLI 181          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH17_MYCTA (Probable enoyl-CoA hydratase echA17 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=echA17 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 50/190 (26.32%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLV 612
            + ++ +   + ++ +  L L+RP   NA++R+ + E   A + L +  +V A++L G  + F +G D+  L +++     T             R  Q AV A+    KP +A+I G  +G G+ +  A D R    +  F   E+   +      + RL    G   A EL  +GR F   EA  LGL+
Sbjct:    4 FVNVVVSDGSQDAGLAMLLLSRPPT-NAMTRQVYREVVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAA-----------RIRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLI 181          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH17_MYCBP (Probable enoyl-CoA hydratase echA17 OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=echA17 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 50/190 (26.32%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLV 612
            + ++ +   + ++ +  L L+RP   NA++R+ + E   A + L +  +V A++L G  + F +G D+  L +++     T             R  Q AV A+    KP +A+I G  +G G+ +  A D R    +  F   E+   +      + RL    G   A EL  +GR F   EA  LGL+
Sbjct:    4 FVNVVVSDGSQDAGLAMLLLSRPPT-NAMTRQVYREVVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAA-----------RIRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLI 181          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECH17_MYCBO (Probable enoyl-CoA hydratase echA17 OS=Mycobacterium bovis GN=echA17 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.281e-11
Identity = 50/190 (26.32%), Postives = 86/190 (45.26%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLV 612
            + ++ +   + ++ +  L L+RP   NA++R+ + E   A + L +  +V A++L G  + F +G D+  L +++     T             R  Q AV A+    KP +A+I G  +G G+ +  A D R    +  F   E+   +      + RL    G   A EL  +GR F   EA  LGL+
Sbjct:    4 FVNVVVSDGSQDAGLAMLLLSRPPT-NAMTRQVYREVVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAA-----------RIRQQAVDAVAAIPKPTVAAITGYALGAGLTLALAADWRVSGDNVKFGATEILAGLIPSGDGMARLTRAAGPSRAKELVFSGRFFDAEEALALGLI 181          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHEPW (Fatty acid oxidation complex subunit alpha OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=fadB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 52/217 (23.96%), Postives = 89/217 (41.01%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRK---PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  IE +     + +L  N     N   RE       AL S+ QN ++  ++L+     F  G D+               G F+E+    + +L++A     +      P I++I+G  +G G + + A D R     A   + E  L I    G   RLP +VG  NA+E   +G+      A  +G +  +          ++++ + IAEK
Sbjct:    3 YQSPTIEVELLEDNIAHLCFNAQGSVNKFDRETIDSLNAALDSIKQNNSIKGLMLTSAKPAFIVGADITEFL-----------GLFAEEDAVLLSWLEEANVVFNKLEDLPFPTISAINGFALGAGCETILATDFRVADTTARIGLPETKLGIIPGFGGTVRLPRVVGTDNALEWITSGKDQRPEAALNVGAIDALVAPEQLQSAALKMLKDAIAEK 208          
The following BLAST results are available for this feature:
BLAST of CN185648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
FADB_PSYWF5.752e-1228.49Fatty acid oxidation complex subunit alpha OS=Psyc... [more]
FADB_PSYA27.512e-1225.81Fatty acid oxidation complex subunit alpha OS=Psyc... [more]
FADB_ERWCT9.811e-1224.23Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
FADB_AERHH9.811e-1223.35Fatty acid oxidation complex subunit alpha OS=Aero... [more]
YHAR_BACSU1.281e-1124.59Putative enoyl-CoA hydratase/isomerase yhaR OS=Bac... [more]
ECH17_MYCTU1.281e-1126.32Probable enoyl-CoA hydratase echA17 OS=Mycobacteri... [more]
ECH17_MYCTA1.281e-1126.32Probable enoyl-CoA hydratase echA17 OS=Mycobacteri... [more]
ECH17_MYCBP1.281e-1126.32Probable enoyl-CoA hydratase echA17 OS=Mycobacteri... [more]
ECH17_MYCBO1.281e-1126.32Probable enoyl-CoA hydratase echA17 OS=Mycobacteri... [more]
FADB_SHEPW1.674e-1123.96Fatty acid oxidation complex subunit alpha OS=Shew... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185648 ID=CN185648; Name=CN185648; organism=Citrus sinensis; type=EST; length=695bp
AGGCTTGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATC
GATAAAAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATC
TTAACCGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAA
TTCCCTAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCAT
CGTCCTCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAA
CACTAAGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTC
TCCGAGAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGC
CATCGAGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTA
TCGGAGGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCA
AAAGATGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGA
TCTCGGGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGA
TGGAATTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAG
TTGGGTCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGG
TGTCAGGCTTGTTGCCGAGGGAATTGCTGAAAAATCTCCTCTTGC
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