CN185648

Overview
NameCN185648
Unique NameCN185648
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:1..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 52/176 (29.55%), Postives = 87/176 (49.43%), Query Frame = 1
Query:  100 LNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLG---TLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVS 615
            LNRP   NAL+          L   +++P    +++ G G   FC+G D++   +VTD   + DR   ++ F R+   L +A+      +KP +A I G  +GGGV +      R  S++  F++ E  + +  D+G    L RLP  +G    + LALTG R  G + ++ G+ +
Sbjct:   50 LNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIR---AVTDAGKAGDR--LAQDFFREEYILNNAIGTY---KKPYVALIDGITMGGGVGLSVHGHFRVASENTLFAMPETAIGLFPDVGGGYFLPRLPGKLG----LYLALTGFRLKGSDVQKAGIAT 213          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_VIBVU (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus GN=fadB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 48/214 (22.43%), Postives = 88/214 (41.12%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y++  ++ K     V  +    P+  N L         KAL +L  +  +  ++L+   + F  G D+     +          +  E+  + ++F       +E    P +A + G  +GGG + V A D+R   K     + E  L I    G   RLP ++G  +AME+   G+     EA ++GL+  V  +       ++ + + I EK
Sbjct:    3 YQAETLQVKEVQDGVAEILFCAPNSVNKLDLATLASLDKALDALTAHSGLKGVMLTSDKEAFIVGADITEFLGLF--------AKPEEELDQWLQFANSIFNKLEDLPVPTVAVVKGHTLGGGCECVLATDLRIGDKTTSIGLPETKLGIMPGFGGCVRLPRVIGADSAMEIITQGKACRAEEALKIGLLDAVVDSDRLYASALQTLTDAINEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_VIBPA (Fatty acid oxidation complex subunit alpha OS=Vibrio parahaemolyticus GN=fadB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 50/214 (23.36%), Postives = 87/214 (40.65%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y++  ++ K     +  L    P   N L         KAL +L  +  +  ++L+   D F  G D+     +   T +        +  + ++F       +E    P I+ + G  +GGG + V A D+R   K     + E  L I    G   RLP ++G  +AME+   G+     EA ++GL+  V  T    +  ++ +   I EK
Sbjct:    3 YQADTLQVKEIQDGIAELSFCSPKSVNKLDLATLESLDKALDALTSHQGLKGLMLTSDKDAFIVGADITEFLGLFAKTDA--------ELDQWLQFANSIFNKLEDLPVPTISVLKGHTLGGGCECVLATDMRIGDKTTSIGLPETKLGIMPGFGGCVRLPRVIGADSAMEIITQGKACRADEALKIGLLDAVVETDALYESALQTLTSAINEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_SHELP (Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 53/217 (24.42%), Postives = 87/217 (40.09%), Query Frame = 1
Query:   43 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDA---VTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            Y+S  I+ +     +  L  N     N   RE       AL +L Q   V  ++L+   D F  G D+     +     +  +G           +L+DA      +E    P I++I G  +GGG + + A D+R     A   + E  L I    G   RLP ++G  NA+E   TG+      A ++G +  V           +++ + I+EK
Sbjct:    3 YQSPTIQVELLEDNIARLCFNAEGSVNKFDRETLNSLNDALDALAQTQGVKGLMLTSGKDAFIVGADITEFLGLFAQDDNVLQG-----------WLEDANKVFNKLEDLPFPTISAIKGFALGGGCETILATDLRIADTSARIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRPEAALKVGAIDAVVAPELLETAACQMLQDAISEK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: FADB_PHOPR (Fatty acid oxidation complex subunit alpha OS=Photobacterium profundum GN=fadB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 49/197 (24.87%), Postives = 86/197 (43.65%), Query Frame = 1
Query:   94 LYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEK 684
            L LN P   N    +      +AL++L Q  ++  ++++   D F  G D+     +          + +E+  + +    D    +E    P +++I+G  +GGG + V A D R     A   + E  L I    G   RLP ++G  +AME+   G+     +A +LGLV  V   +   D  + ++ + IA K
Sbjct:   20 LNLNAPGAVNKFDLKTLECLNEALNALYQQSDLKGLLITSDKDAFIVGADITEFLGLF--------AKPAEELSQWLTRANDIFNKLEDLPVPTLSAINGHALGGGCECVLATDFRLADITARIGLPETRLGIMPGFGGTVRLPRLLGADSAMEIITAGKDKKAQDALKLGLVDAVVAPTALKDAALSMIKDAIAGK 208          
BLAST of CN185648 vs. ExPASy Swiss-Prot
Match: ECHH_RHOCA (Probable enoyl-CoA hydratase OS=Rhodobacter capsulatus GN=fadB1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.359e-11
Identity = 54/191 (28.27%), Postives = 85/191 (44.50%), Query Frame = 1
Query:   40 SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLV 612
            SY +I+ E    +  +  + L+RP   NAL+     E   AL          AIVL+G+G  FCSG DL   ++   +  +  R  +           +  + AI  C  PV+A+++GA  G G ++  A D+   ++ A F      + +  D G    LP  VG   AM +AL   +    EA  +GL+
Sbjct:    2 SYHTIRYE---ISEGLAVITLDRPEVMNALNAAMRHELTAALHRA--RGEARAIVLTGSGRAFCSGQDLGDGAAEGLNLETVLREEY-----------EPLLQAIYSCPLPVLAAVNGAAAGAGANLALAADVVIAAQSAAFMQAFTRIGLMPDAGGTWWLPRQVGMARAMGMALFAEKIGAEEAARMGLI 176          
The following BLAST results are available for this feature:
BLAST of CN185648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 206
Match NameE-valueIdentityDescription
HIBCH_XENTR4.869e-1129.553-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
FADB_VIBVU6.359e-1122.43Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_VIBPA6.359e-1123.36Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADB_SHELP6.359e-1124.42Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADB_PHOPR6.359e-1124.87Fatty acid oxidation complex subunit alpha OS=Phot... [more]
ECHH_RHOCA6.359e-1128.27Probable enoyl-CoA hydratase OS=Rhodobacter capsul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185648 ID=CN185648; Name=CN185648; organism=Citrus sinensis; type=EST; length=695bp
AGGCTTGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATC
GATAAAAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATC
TTAACCGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAA
TTCCCTAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCAT
CGTCCTCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAA
CACTAAGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTC
TCCGAGAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGC
CATCGAGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTA
TCGGAGGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCA
AAAGATGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGA
TCTCGGGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGA
TGGAATTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAG
TTGGGTCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGG
TGTCAGGCTTGTTGCCGAGGGAATTGCTGAAAAATCTCCTCTTGC
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