CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_THEAQ (Superoxide dismutase [Mn] OS=Thermus aquaticus GN=sodA PE=3 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 4.247e-22
Identity = 66/209 (31.58%), Postives = 92/209 (44.02%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVI-ASYNKGDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 738
            F+L    YP  ALEPH+   T+E H  KHH AYV NLN  +       G  +E ++   +    D+  A  NN     NH  FW                  I+  FG               +FGSGWAWLV                  +    L V+ T N  NP++  ++ ++ IDVWEHAYYL +QNRR DY+    + +++W+
Sbjct:    5 FKLPELGYPYEALEPHIDARTMEIHHQKHHGAYVTNLNAALEKYPYLQGAEVETLLRHLTALPADIQAAVRNNGGGHLNHSLFWRLLTPGGAKEPVGELKKAIDEQFGGFAALKEKLTQAAMGRFGSGWAWLV-----------------KDPFGKLHVISTANQDNPVMGGFAPIVGIDVWEHAYYLKYQNRRADYLQAIWN-VLNWD 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM2_BACCR (Superoxide dismutase [Mn] 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=sodA2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.244e-22
Identity = 65/216 (30.09%), Postives = 98/216 (45.37%), Query Frame = 1
Query:  112 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + F+L    Y  + LEPH+  +TL  H GKHH  YV+NLN  +        KSLE+++  + +  K  +    NN    + H  FW                 +I+  F +             ++FGSG+ WLV                     + L V+ TPN   PL      LL IDVWEHAYYL +QNRRP++++ +    V+W+ V+++
Sbjct:    2 SSFQLPKLSYDYDELEPHIDSNTLSIHHGKHHATYVNNLNATLENYTELHNKSLEELLCNLDTLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDG------------------EELSVMSTPNQDTPLQEGKIPLLVIDVWEHAYYLKYQNRRPEFVTNWW-HTVNWDQVNEK 198          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM2_BACAN (Superoxide dismutase [Mn] 2 OS=Bacillus anthracis GN=sodA2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.753e-21
Identity = 64/216 (29.63%), Postives = 98/216 (45.37%), Query Frame = 1
Query:  112 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + F+L    Y  + LEP++  +TL  H GKHH  YV+NLN  +        KSLE+++  + +  K  +    NN    + H  FW                 +I+  F +             ++FGSG+ WLV                     + L V+ TPN   PL      LL IDVWEHAYYL +QNRRP++++ +    V+W+ V+++
Sbjct:    2 SSFQLPKLSYDYDELEPYIDSNTLSIHHGKHHATYVNNLNAALENYSELHNKSLEELLCNLETLPKEIVTAVRNNGGGHYCHSLFWEVMSPRGGGEPNGDVAKVIDYYFNTFDNLKDQLSKAAISRFGSGYGWLVLDG------------------EELSVMSTPNQDTPLQEGKIPLLVIDVWEHAYYLKYQNRRPEFVTNWW-HTVNWDRVNEK 198          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM1_PLEBO (Superoxide dismutase [Mn] 1 OS=Plectonema boryanum GN=sodA1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.595e-21
Identity = 66/222 (29.73%), Postives = 105/222 (47.30%), Query Frame = 1
Query:  103 QISAK-FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS--LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            Q+SA   +L P PY   ALEP++   T+  H  KHH  YV+N+N+ +        +S++ ++  +    +       NN     NH  FW                  I++ FGS              +FGSGWAWLV                 S++   L +  T N  NPL+ + ++  +L  DVWEHAYYL +QNRR +Y++ + + +V+W++V++R
Sbjct:   38 QLSASPAKLDPLPYDYAALEPYIDAQTMRLHHDKHHATYVNNINETLKAYPDLQKQSVDSLIQNLNQVPEAIRTKIRNNGGGHVNHTMFWQIMAPKAGGTPTGAVAKAIDQTFGSFDAFKQQFNKAGADRFGSGWAWLV-----------------SDRQGKLSITSTANQDNPLMSNPNAYPILGNDVWEHAYYLKYQNRRAEYLTNWWN-VVNWQAVNQR 241          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_KLEPL (Superoxide dismutase [Fe] (Fragment) OS=Klebsiella planticola GN=sodA PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 6.132e-21
Identity = 64/191 (33.51%), Postives = 81/191 (42.41%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYY 672
            +EL   PY  +ALEPH+   T E H  KHH  YV NLN  + GTE  D K + D++       D LPA       NN     NH  FW                  I+  FGS             T+FGSGWAWL+                      S+ V  TPN  +P++   + +L +DVWEHAYY
Sbjct:    3 YELPQLPYAYDALEPHIDAKTXEIHHSKHHNTYVTNLNAAVEGTEFAD-KDINDLIAML----DALPADKQTAVRNNGGGHANHTLFWEVIAPGGSNTPVGEVAKAIDAKFGSFDAFKEEFAKAATTRFGSGWAWLIV------------------DGDSVAVTSTPNQDSPVMEGKTPVLGLDVWEHAYY 170          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_BUCAI (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sodA PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.009e-21
Identity = 69/217 (31.80%), Postives = 96/217 (44.24%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIAS---YNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            PY  NALEP   ++T++ H  KHH+ Y++N N  +  T        E + I +     K + L   NNA    NH FFW                  IE+ FG+               FGSGW WLV                   ++  L +V T N  +PL+    S      ++ +D+WEHAYYL +QNRR DYI  F + +V+WE  S RL+
Sbjct:    9 PYSYNALEPFFDEETMKIHHTKHHQNYINNTNSILENTTFSSLPIEELISILNEIILEKKNALR--NNAGGHINHSFFWKSLKSGTVLTNDLKIE--IEKQFGTIDEFKEKFESVALNHFGSGWVWLV------------------NQNGVLSIVSTVNQDSPLMGKLISNTYGYPIIGLDIWEHAYYLKYQNRRLDYIKSFWN-VVNWEEASNRLQ 202          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_BORBU (Superoxide dismutase [Fe] OS=Borrelia burgdorferi GN=sod PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.046e-20
Identity = 71/216 (32.87%), Postives = 92/216 (42.59%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAF-----NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            F+L    Y  +A+EP++   T+E H  KHH  +V NLN  +   E      L DV     N  D    F     NNA    NH  ++                  I   FGS               FGSGWAWLV                    +  L V+  PN  +PL+  Y  +L IDVWEHAYYL +QNRR +Y+  F+ K ++WE VSK
Sbjct:    2 FKLPELGYDYDAVEPYIDAKTMEIHHSKHHNGFVMNLNSIL---EKMGKIHLTDVSNILKNIHDFPEEFQTLIRNNAGGYSNHTLYFRTLRPGNKDNLFEKFKDDINAAFGSLDVLKANLKDTAMKIFGSGWAWLVLCP-----------------ESGLKVISMPNQDSPLMNSYKPILGIDVWEHAYYLKYQNRRIEYVDAFL-KALNWEEVSK 196          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRMU (Superoxide dismutase [Mn/Fe] OS=Streptococcus mutans GN=sodA PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20
Identity = 65/212 (30.66%), Postives = 96/212 (45.28%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPA------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEP++  +T+  H  KHH  YV N N  +    E+G+     +V++A   +   +PA       NN     NH  FW                 + E  FGS             T+FGSGWAWLV                  +K+  L V  T N   P+      +L +DVWEHAYYL+++N RP+YI  F + +++W +V++
Sbjct:    9 PYAYDALEPYIDAETMTLHHDKHHATYVANANAALEKHPEIGENL---EVLLADVEQ---IPADIRQSLINNGGGHLNHALFWELLSPEKTKVTAEVAAAINEA-FGSFDDFKAAFTAAATTRFGSGWAWLVV-----------------DKEGKLEVTSTANQDTPISQGLKPILALDVWEHAYYLNYRNVRPNYIKAFFE-VINWNTVAR 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM3_PLEBO (Superoxide dismutase [Mn] 3 (Fragment) OS=Plectonema boryanum GN=sodA3 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.975e-20
Identity = 64/220 (29.09%), Postives = 97/220 (44.09%), Query Frame = 1
Query:  121 ELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKG-DLLPAF------NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +L P PY   AL   +  +T+  H  +HH+ YVDNLN     T L D  +L+++ I +  +  + +P        NNA    NH  FW                  I + FG+              +FGSGW WLV                       L +V T N  NP++     ++  DVWEHAYYL +QNRR DY++ + + +V+W  +++R +
Sbjct:   34 QLPPLPYDAGALSKAIDAETMRIHHDRHHQTYVDNLN-----TALKDQPNLQNLSIEAMLRDLNAVPENIRNTIRNNAGGHLNHTIFWQIMSPDGGGQPTGAIAQAINQTFGNFESFRKQFNEAGGDRFGSGWVWLV-----------------RNAQGQLQIVSTANQDNPIMEGNYPIMGNDVWEHAYYLRYQNRRADYLNNWWN-VVNWNEINRRFQ 230          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_METTH (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum GN=sod PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.975e-20
Identity = 68/217 (31.34%), Postives = 99/217 (45.62%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLE-DVVIASYNKGDLLPAFNNAAQAWNHDFFW--XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +EL   PYP +ALEPH+S++ L  H  KHH+AYVD  N  +   +L + +  + DV I    K  L     +      H FFW                    IE+DFGS             +  GSGWA L Y                 ++   L +++       ++  +  LL +DVWEHAYY+D++N RPDY+  F + +V+W+ V KR E
Sbjct:    9 YELPELPYPYDALEPHISREQLTIHHQKHHQAYVDGANALL--RKLDEARESDTDVDI----KAALKELSFHVGGYVLHLFFWGNMGPADECGGEPSGKLAEYIEKDFGSFERFRKEFSQAAISAEGSGWAVLTY----------------CQRTDRLFIMQVEKHNVNVIPHFRILLVLDVWEHAYYIDYRNVRPDYVEAFWN-IVNWKEVEKRFE 202          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM_THEAQ4.247e-2231.58Superoxide dismutase [Mn] OS=Thermus aquaticus GN=... [more]
SODM2_BACCR7.244e-2230.09Superoxide dismutase [Mn] 2 OS=Bacillus cereus (st... [more]
SODM2_BACAN2.753e-2129.63Superoxide dismutase [Mn] 2 OS=Bacillus anthracis ... [more]
SODM1_PLEBO3.595e-2129.73Superoxide dismutase [Mn] 1 OS=Plectonema boryanum... [more]
SODM_KLEPL6.132e-2133.51Superoxide dismutase [Fe] (Fragment) OS=Klebsiella... [more]
SODM_BUCAI8.009e-2131.80Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM_BORBU1.046e-2032.87Superoxide dismutase [Fe] OS=Borrelia burgdorferi ... [more]
SODM_STRMU2.330e-2030.66Superoxide dismutase [Mn/Fe] OS=Streptococcus muta... [more]
SODM3_PLEBO3.975e-2029.09Superoxide dismutase [Mn] 3 (Fragment) OS=Plectone... [more]
SODF_METTH3.975e-2031.34Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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