CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_BORPE (Superoxide dismutase [Mn] OS=Bordetella pertussis GN=sodA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.191e-20
Identity = 63/209 (30.14%), Postives = 92/209 (44.02%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            Y  +ALEPH+   T+E H  +HH+ YV+ LN  + G  L   + +E ++  I +   G      N+     NH   W                  I+   G               +FGSGWAWL                 P+ +   L V  + N  +PL+   + +L +DVWEHAYYL +QNRRP+YI  F  ++V W  V++R E
Sbjct:   10 YAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALEGAGLDSEEPVEQLLRRIPALPPGIHGAVRNHGGGHANHSLLWTVMSPSGGGRPDGRLAADIQAQLGGHDAFQAAFTQAALGRFGSGWAWLTVT--------------PAGR---LRVDSSANQDSPLMEGNTPILGLDVWEHAYYLQYQNRRPEYIEAFY-RVVDWAEVARRYE 200          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRR6 (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=sodA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.855e-20
Identity = 62/206 (30.10%), Postives = 86/206 (41.75%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEP++  +T+  H  KHH+ YV+N N  +    E+G+        + S          NN     NH  FW                  I+  FGS             T+FGSGWAWLV                   K+  L V  T N   P+      +L +DVWEHAYY+ ++N RPDYI  F   +++W  V +
Sbjct:    9 PYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTAPSAELAAA-IDATFGSFEEFQAAFTAAATTRFGSGWAWLVVN-----------------KEGKLEVTSTANQDTPISEGKKPILGLDVWEHAYYVKYRNVRPDYIKAFF-SVINWNKVDE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRPN (Superoxide dismutase [Mn] OS=Streptococcus pneumoniae GN=sodA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.855e-20
Identity = 62/206 (30.10%), Postives = 86/206 (41.75%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEP++  +T+  H  KHH+ YV+N N  +    E+G+        + S          NN     NH  FW                  I+  FGS             T+FGSGWAWLV                   K+  L V  T N   P+      +L +DVWEHAYY+ ++N RPDYI  F   +++W  V +
Sbjct:    9 PYAYDALEPYIDAETMHLHHDKHHQTYVNNANAALEKHPEIGEDLEALLADVESIPADIRQALINNGGGHLNHALFWELMTPEKTAPSAELAAA-IDATFGSFEEFQAAFTAAATTRFGSGWAWLVVN-----------------KEGKLEVTSTANQDTPISEGKKPILGLDVWEHAYYVKYRNVRPDYIKAFF-SVINWNKVDE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_BUCBP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sodA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.156e-19
Identity = 65/217 (29.95%), Postives = 100/217 (46.08%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-----IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            PY  N+LEP   + T+  H  +HH+AY++N N  + GT   +   +E+++     ++  NK   L   NNA    NH  FW                 ++E++F S             + FGSGW WL+ K                  D +L +V T N   PL+    S      +L +D+WEHAYYL ++N R DY++ F + +V+W+ VS R
Sbjct:    9 PYSYNSLEPFFDEKTMIIHHTRHHQAYINNTNSILNGTHY-ENLLIEELISKLNILSIENK---LALQNNAGGHINHSLFWKWLKLNTILKDDFKI--ILEKNFKSVDFFKKQFEKIALSHFGSGWIWLIKKY-----------------DNTLRIVTTVNQNTPLMGKEISGISGIPILGLDLWEHAYYLKYKNNRSDYVNAFWN-VVNWDEVSYR 201          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_BUCAP (Superoxide dismutase [Mn] OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sodA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.973e-19
Identity = 70/224 (31.25%), Postives = 97/224 (43.30%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVV-----IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSS------LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 756
            + L    Y  NALEP   ++T+  H  KHH+ Y++N N  +  T      S+E+++     I+  NK  L    NNA    NH  FW                  I + FGS               FGSGW WLV                   ++  L +V T N  NPL+    S      +  +D+WEHAYYL +QNRR DYI  F + +V+W+  S+RL
Sbjct:    3 YSLPDLSYAYNALEPFFDEETMRIHHTKHHQNYINNTNSILERTNFSS-LSIEELMSIFNEISLENKNVLR---NNAGGHINHSLFWKGLKIGTILQGDLKSE--INKQFGSVEYFKSKFEDIALNHFGSGWIWLV------------------NQNGILSIVSTINQDNPLMGKSISGTHGNPIFGLDLWEHAYYLKYQNRRLDYIKSFWN-VVNWDEASRRL 201          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRP8 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M18 GN=sodA PE=3 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19
Identity = 66/209 (31.58%), Postives = 94/209 (44.98%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNK--GDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEP    +T+  H  KHH  YV N N  +    E+G+  +LE++ +A   K   D+  A  NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+      +L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+
Sbjct:    9 PYAYDALEPQFDAETMSLHHDKHHATYVANTNAALEKHPEIGE--NLEEL-LADVTKIPEDIRQALINNGGGHLNHALFWELLSPEKQDVTPDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRAG (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae GN=sodA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19
Identity = 60/206 (29.13%), Postives = 87/206 (42.23%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEPH+  +T+  H  KHH  YV N N  +    E+G+        ++   +       NN     NH  FW                  I   FGS              +FGSGWAWLV                    +  L V+ T N   P++     +L +DVWEHAYYL+++N RP+YI  F + +++W  V++
Sbjct:    9 PYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQELSED-INATFGSFEDFKAAFTAAATGRFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRA5 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype V GN=sodA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19
Identity = 60/206 (29.13%), Postives = 87/206 (42.23%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEPH+  +T+  H  KHH  YV N N  +    E+G+        ++   +       NN     NH  FW                  I   FGS              +FGSGWAWLV                    +  L V+ T N   P++     +L +DVWEHAYYL+++N RP+YI  F + +++W  V++
Sbjct:    9 PYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQELSED-INATFGSFEDFKAAFTAAATGRFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRA3 (Superoxide dismutase [Mn/Fe] OS=Streptococcus agalactiae serotype III GN=sodA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19
Identity = 60/206 (29.13%), Postives = 87/206 (42.23%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEPH+  +T+  H  KHH  YV N N  +    E+G+        ++   +       NN     NH  FW                  I   FGS              +FGSGWAWLV                    +  L V+ T N   P++     +L +DVWEHAYYL+++N RP+YI  F + +++W  V++
Sbjct:    9 PYAYDALEPHIDAETMTLHHDKHHATYVANANAALEKHPEIGEDLEALLADVSQIPEDIRQAVINNGGGHLNHALFWELMSPEETQISQELSED-INATFGSFEDFKAAFTAAATGRFGSGWAWLVVNA-----------------EGKLEVLSTANQDTPIMEGKKPILGLDVWEHAYYLNYRNVRPNYIKAFFE-IINWNKVNE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_MOUSE (Superoxide dismutase [Mn], mitochondrial OS=Mus musculus GN=Sod2 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 4.395e-19
Identity = 68/222 (30.63%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN            + E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                  K++  L +   +  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:   25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------ATEEKYHEALAKGDVTTQVALQPALKFNGGGHINHTIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGF-----------------NKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 216          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM_BORPE5.191e-2030.14Superoxide dismutase [Mn] OS=Bordetella pertussis ... [more]
SODM_STRR68.855e-2030.10Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_STRPN8.855e-2030.10Superoxide dismutase [Mn] OS=Streptococcus pneumon... [more]
SODM_BUCBP1.156e-1929.95Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM_BUCAP1.973e-1931.25Superoxide dismutase [Mn] OS=Buchnera aphidicola s... [more]
SODM_STRP84.395e-1931.58Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRAG4.395e-1929.13Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA54.395e-1929.13Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_STRA34.395e-1929.13Superoxide dismutase [Mn/Fe] OS=Streptococcus agal... [more]
SODM_MOUSE4.395e-1930.63Superoxide dismutase [Mn], mitochondrial OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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