CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRP6 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M6 GN=sodA PE=3 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.740e-19
Identity = 66/209 (31.58%), Postives = 94/209 (44.98%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNK--GDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEP    +T+  H  KHH  YV N N  +    E+G+  +LE++ +A   K   D+  A  NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+      +L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+
Sbjct:    9 PYAYDALEPQFDAETMTLHHDKHHATYVANANAALEKHPEIGE--NLEEL-LADVTKIPEDIRQALINNGGGHLNHALFWELLSPEKQDITPDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRP3 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M3 GN=sodA PE=3 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 5.740e-19
Identity = 66/209 (31.58%), Postives = 94/209 (44.98%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVVIASYNK--GDLLPAF-NNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEP    +T+  H  KHH  YV N N  +    E+G+  +LE++ +A   K   D+  A  NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+      +L +DVWEHAYYL+++N RP+YI  F + +++W+ VS+
Sbjct:    9 PYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGE--NLEEL-LADVTKIPEDIRQALINNGGGHLNHALFWELLSPEKQDVTSDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVSE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRP1 (Superoxide dismutase [Mn] OS=Streptococcus pyogenes serotype M1 GN=sodA PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.740e-19
Identity = 63/208 (30.29%), Postives = 91/208 (43.75%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            PY  +ALEP    +T+  H  KHH  YV N N  +    E+G+  +LE+++  +    +       NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+      +L +DVWEHAYYL+++N RP+YI  F + +V+W+ VS+
Sbjct:    9 PYAYDALEPQFDAETMTLHHDKHHATYVANTNAALEKHPEIGE--NLEELLADVTKIPEDIRQTLINNGGGHLNHALFWELLSPEKQDVTPDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IVNWKKVSE 195          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_METTM (Superoxide dismutase [Fe] OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) GN=sod PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.740e-19
Identity = 67/217 (30.88%), Postives = 100/217 (46.08%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGK-SLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW--XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +EL   PYP +ALEP++S++ L  H  KHH+AYVD  N   V  +L D + + E+V I    K  L     +      H FFW                    IE+DFGS             +  GSGWA L Y                 ++   L +++       ++  +  L+ +DVWEHAYY+D++N RPDY+  F + +V+W+ V KR +
Sbjct:    6 YELPELPYPYDALEPYISEEQLRIHHEKHHQAYVDGANG--VLRKLDDARENGEEVDI----KAALKELSFHVGGYVLHLFFWGNMGPADECGGEPDGRLAEYIEKDFGSFQRFKKEFSQAAVSAEGSGWAVLTY----------------CQRTDRLFIMQVEKHNVNVIPHFRILMVLDVWEHAYYIDYRNVRPDYVEAFWN-IVNWKEVEKRFD 199          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_RAT (Superoxide dismutase [Mn], mitochondrial OS=Rattus norvegicus GN=Sod2 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.496e-19
Identity = 66/216 (30.56%), Postives = 92/216 (42.59%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH  YV+NLN  +   +  +  +  DV      +  L PA   N     NH  FW                  I+RDFGS                GSGW WL +                  K++  L +   +  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+VS+R
Sbjct:   25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHATYVNNLN--VTEEKYHEALAKGDVT----TQVALQPALKFNGGGHINHSIFWTNLSPKGGGEPKGELLEAIKRDFGSFEKFKEKLTAVSVGVQGSGWGWLGF-----------------NKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVSQR 216          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_CEBAP (Superoxide dismutase [Mn], mitochondrial OS=Cebus apella GN=SOD2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.496e-19
Identity = 69/222 (31.08%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:    1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------DTEEKYKEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAASVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_CALJA (Superoxide dismutase [Mn], mitochondrial OS=Callithrix jacchus GN=SOD2 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.496e-19
Identity = 69/222 (31.08%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:    1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------DTEEKYKEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAASVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_BOVIN (Superoxide dismutase [Mn], mitochondrial OS=Bos taurus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.496e-19
Identity = 68/222 (30.63%), Postives = 91/222 (40.99%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                  K++  L +   +  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V+ R
Sbjct:   25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VAEEKYREALEKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPQGELLEAIKRDFGSFAKFKEKLTAVSVGVQGSGWGWLGF-----------------NKEQGRLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTAR 216          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_MACMU (Superoxide dismutase [Mn], mitochondrial OS=Macaca mulatta GN=SOD2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 69/222 (31.08%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:    1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGF----------------NKERGQLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_MACFU (Superoxide dismutase [Mn], mitochondrial OS=Macaca fuscata fuscata GN=SOD2 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 69/222 (31.08%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:    1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGF----------------NKERGQLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM_STRP65.740e-1931.58Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP35.740e-1931.58Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_STRP15.740e-1930.29Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODF_METTM5.740e-1930.88Superoxide dismutase [Fe] OS=Methanobacterium ther... [more]
SODM_RAT7.496e-1930.56Superoxide dismutase [Mn], mitochondrial OS=Rattus... [more]
SODM_CEBAP7.496e-1931.08Superoxide dismutase [Mn], mitochondrial OS=Cebus ... [more]
SODM_CALJA7.496e-1931.08Superoxide dismutase [Mn], mitochondrial OS=Callit... [more]
SODM_BOVIN7.496e-1930.63Superoxide dismutase [Mn], mitochondrial OS=Bos ta... [more]
SODM_MACMU9.790e-1931.08Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_MACFU9.790e-1931.08Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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