CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_MACFA (Superoxide dismutase [Mn], mitochondrial OS=Macaca fascicularis GN=SOD2 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 9.790e-19
Identity = 69/222 (31.08%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:   25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKFKEKLTAASVGVQGSGWGWLGF----------------NKERGQLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 216          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_PONPY (Superoxide dismutase [Mn], mitochondrial OS=Pongo pygmaeus GN=SOD2 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 69/222 (31.08%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:   25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 216          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_PANTR (Superoxide dismutase [Mn], mitochondrial OS=Pan troglodytes GN=SOD2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 69/222 (31.08%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:    1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_HYLLA (Superoxide dismutase [Mn], mitochondrial OS=Hylobates lar GN=SOD2 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 69/222 (31.08%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:    1 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTATSVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 192          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_HUMAN (Superoxide dismutase [Mn], mitochondrial OS=Homo sapiens GN=SOD2 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 69/222 (31.08%), Postives = 93/222 (41.89%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                +++   L +   PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:   25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGF----------------NKERGHLQIAACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 216          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_DICDI (Superoxide dismutase [Mn], mitochondrial OS=Dictyostelium discoideum GN=sod2 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.279e-18
Identity = 70/225 (31.11%), Postives = 96/225 (42.67%), Query Frame = 1
Query:  100 GQISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL-VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLET 762
            G  S  + L   PY   AL P +S + +  H  KHH+ YV+NLN  I   +L    S +DV      +  +   FN      NH  FW                 L   I + +GS                GSGW WL Y                 +K    LV++T    +PL V  Y  LL IDVWEHAYYLD++N R DY+     ++V+W++V++R  T
Sbjct:   22 GSQSNSYTLPDLPYDYGALSPVISPEIMTLHHKKHHQTYVNNLN--IALDKLSSASSAKDVAQMIALQSAI--KFNGGGHV-NHSIFWTNLAPKNQDGGVAPSGPLADAINKQYGSIEKLIEKMSAETTAIQGSGWGWLGY-----------------DKANDRLVIQTQQNQDPLSVSGYVPLLGIDVWEHAYYLDYKNVRADYVKNIW-QIVNWKNVAERYNT 223          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_MACNE (Superoxide dismutase [Mn], mitochondrial OS=Macaca nemestrina GN=SOD2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.670e-18
Identity = 68/222 (30.63%), Postives = 91/222 (40.99%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                  K++  L +      +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:   25 KHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLN------------VTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFEKYKEKLTAASVGVQGSGWGWLGF-----------------NKERGQLQIAACLNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVTER 216          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_STRPY (Superoxide dismutase [Mn] OS=Streptococcus pyogenes GN=sodA PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 61/207 (29.47%), Postives = 90/207 (43.48%), Query Frame = 1
Query:  136 PYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVG-TELGDGKSLEDVV--IASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVS 747
            PY  +ALEP    +T+  H  KHH  YV N +  +    E+G+  +LE+++  +    +       NN     NH  FW                  I+  FGS              +FGSGWAWLV                   K+  L +  T N   P+      +L +DVWEHAYYL+++N RP+YI  F + +++W+ VS
Sbjct:    9 PYAYDALEPQFDAETMTLHHDKHHATYVANTDAALEKHPEIGE--NLEELLADVPKIPEDIRQALINNGGGHLNHALFWELLSPEKQDVTPDVAQA-IDDAFGSFDAFKEQFTAAATGRFGSGWAWLVVN-----------------KEGQLEITSTANQDTPISEGKKPILALDVWEHAYYLNYRNVRPNYIKAFFE-IINWKKVS 194          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_RABIT (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Oryctolagus cuniculus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.346e-18
Identity = 67/222 (30.18%), Postives = 91/222 (40.99%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEPH++   +E H  KHH AYV+NLN            + E+    +  +GD      L PA         NH  FW                  I+RDFGS                GSGW WL +                  K++  L +      +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+V++R
Sbjct:    6 KHSLPDLPYDYGALEPHINAQIMELHHSKHHAAYVNNLN------------ATEEKYREALARGDVTAHVALQPALKFKGGGHINHTIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKERLTAVSVGVQGSGWGWLGF-----------------NKEQGHLQIAACANQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VITWENVTER 197          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_HORSE (Superoxide dismutase [Mn], mitochondrial OS=Equus caballus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 71/223 (31.84%), Postives = 93/223 (41.70%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLL-VVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L    Y   ALEP+++   ++ H  KHH AYV+NLN              E+    +  KGD      L PA   N     NH  FW                  I+RDFGS                GSGW WL +                  KD+  L +V  PN  +PL        LL IDVWEHAYYL ++N RPDY+    + +++WE+VS+R
Sbjct:   25 KHSLPDLQYDYGALEPYINAQIMQLHHSKHHAAYVNNLNVT------------EEKYQEALAKGDVTAQIALQPALKFNGGGHINHTIFWTNLSPNGGGEPKGKLLDAIKRDFGSFDKFKEKLTAVSAGVQGSGWGWLGFN-----------------KDQGRLQIVACPNQ-DPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWN-VINWENVSER 216          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM_MACFA9.790e-1931.08Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_PONPY1.279e-1831.08Superoxide dismutase [Mn], mitochondrial OS=Pongo ... [more]
SODM_PANTR1.279e-1831.08Superoxide dismutase [Mn], mitochondrial OS=Pan tr... [more]
SODM_HYLLA1.279e-1831.08Superoxide dismutase [Mn], mitochondrial OS=Hyloba... [more]
SODM_HUMAN1.279e-1831.08Superoxide dismutase [Mn], mitochondrial OS=Homo s... [more]
SODM_DICDI1.279e-1831.11Superoxide dismutase [Mn], mitochondrial OS=Dictyo... [more]
SODM_MACNE1.670e-1830.63Superoxide dismutase [Mn], mitochondrial OS=Macaca... [more]
SODM_STRPY4.859e-1829.47Superoxide dismutase [Mn] OS=Streptococcus pyogene... [more]
SODM_RABIT6.346e-1830.18Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_HORSE8.288e-1831.84Superoxide dismutase [Mn], mitochondrial OS=Equus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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