CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_HEVBR (Superoxide dismutase [Mn], mitochondrial OS=Hevea brasiliensis GN=SODA PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.149e-17
Identity = 68/217 (31.34%), Postives = 93/217 (42.86%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSL---LTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSK 750
            F L   PY   ALEP +S + ++ H  KHH+ Y+ N NK +   +L D  ++E    A+  K      FN      NH  FW                 L   I+ DFGS                GSGW WL                   +K+   LVV+T    +PLV    +L   L IDVWEHAYYL ++N RPDY+     K+++W+  S+
Sbjct:   31 FSLPDLPYDYGALEPAISGEIMQLHHQKHHQTYITNYNKAL--EQLND--AIEKGDSAAVVKLQSAIKFNGGGHV-NHSIFWKNLAPVREGGGELPHGSLGWAIDADFGSLEKLIQLMNAEGAALQGSGWVWLAL-----------------DKELKKLVVETTANQDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIW-KVMNWKYASE 224          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM2_CAEEL (Superoxide dismutase [Mn] 2, mitochondrial OS=Caenorhabditis elegans GN=sod-3 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.372e-17
Identity = 67/224 (29.91%), Postives = 95/224 (42.41%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA--------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + +K  L   P+    LEP +S + ++ H  KHH  YV+NLN+            +E+ +  + +KG+L  A        FN      NH  FW                  I+RDFGS                GSGW WL Y                 +KDK L +    N  +PL      L  IDVWEHAYYL ++N RPDY+     K+ +W+++S+R
Sbjct:   22 VRSKHTLPDLPFDYADLEPVISHEIMQLHHQKHHATYVNNLNQ------------IEEKLHEAVSKGNLKEAIALQPALKFNGGGHI-NHSIFWTNLAKDGGEPSKELMDT-IKRDFGSLDNLQKRLSDITIAVQGSGWGWLGY----------------CKKDKILKIATCANQ-DPLE-GMVPLFGIDVWEHAYYLQYKNVRPDYVHAIW-KIANWKNISER 212          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_BACSU (Probable superoxide dismutase [Fe] OS=Bacillus subtilis GN=sodF PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.163e-17
Identity = 62/215 (28.84%), Postives = 94/215 (43.72%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            K  L   PY  +ALEP++S+D +  H  KHH++YVD LNK    +EL   ++ ++  + ++ + +L  AF+ A   + H  FW                 +I+  FGS                G GWA LV+               P      +L  +     +   WD   LL +DVWEHAYYL ++N R  Y+  + + +V W    KR E
Sbjct:   79 KHVLPKLPYKYSALEPYISRDIMILHHTKHHQSYVDGLNK--AESELKKARATKNYDLITHWEREL--AFHGAGH-YLHSIFWFSMHPNGKRRPTGALFQMIDLSFGSYSAFKEHFTQASKKVEGVGWAILVW--------------APRSGRLEILTAEKHQLFSQ--WDVIPLLPLDVWEHAYYLQYKNDRASYVDHWWN-VVDWREAEKRFE 271          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_PRUPE (Superoxide dismutase [Mn], mitochondrial OS=Prunus persica GN=SOD PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.563e-16
Identity = 68/220 (30.91%), Postives = 91/220 (41.36%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSL---LTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            F L   PY   ALEP +S D ++ H   HH+ YV N NK +   +L D  S  D    +     +   FN      NH  FW                 L   I+ +FGS                GSGW WL                   +K+   LVV+T    +PLV    +L   L IDVWEHAYYL ++N RPDY+     K+++W+  S+  E
Sbjct:   28 FSLPDLPYNYGALEPAISGDIMQLHHQNHHQTYVTNYNKAL--EQLHDAISKGDAPTVAKLHSAI--KFNGGGHI-NHSIFWKNLAPVREGGGEPPKGSLGWAIDTNFGSLEALVQKMNAEGAALQGSGWVWLAL-----------------DKELKKLVVETTANQDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIW-KVINWKYASEVYE 224          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM1_CAEEL (Superoxide dismutase [Mn] 1, mitochondrial OS=Caenorhabditis elegans GN=sod-2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.666e-16
Identity = 72/236 (30.51%), Postives = 98/236 (41.53%), Query Frame = 1
Query:   76 KMEQRKTG-GQISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGD------LLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K+ Q  TG   + +K  L   PY    LEP +S + ++ H  KHH  YV+NLN+            +E+ +  + +KG+      L PA   N     NH  FW                  I+ DFGS                GSGW WL Y                  K K L V    N  +PL        L  IDVWEHAYYL ++N RPDY++    K+ +W++VS+R
Sbjct:   11 KLVQPITGVAAVRSKHSLPDLPYDYADLEPVISHEIMQLHHQKHHATYVNNLNQ------------IEEKLHEAVSKGNVKEAIALQPALKFNGGGHINHSIFWTNLAKDGGEPSAELLTA-IKSDFGSLDNLQKQLSASTVAVQGSGWGWLGY----------------CPKGKILKVATCANQ-DPLEATTGLVPLFGIDVWEHAYYLQYKNVRPDYVNAIW-KIANWKNVSER 215          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_ONCVO (Superoxide dismutase [Mn], mitochondrial OS=Onchocerca volvulus GN=sod-2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 65/216 (30.09%), Postives = 87/216 (40.28%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW-XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPN--AVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            K  L   PY   ALEP +S + ++ H GKHH AYV+ LN+     +    K      +A    G  L  FN      NH  FW                   I++DFGS                GSGW WL Y                 ++ K L +   PN   + P       L  IDVWEHAYYL ++N RPD++     K+ +W+ +S R
Sbjct:   25 KHVLPDLPYDYGALEPILSAEIMQVHHGKHHAAYVNALNQAEEKVKEALAKGDTQAAVA----GTKLMNFNTGGHI-NHTLFWEGLTAVKNSGEPNSELMTAIKKDFGSLETMIDKLNAKTIAIQGSGWGWLAY----------------DKEMKRLQLACCPNQDLLEPTT-GLIPLFCIDVWEHAYYLQYKNLRPDFVKAIW-KIANWKIISDR 217          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_GLOMM (Superoxide dismutase [Mn], mitochondrial OS=Glossina morsitans morsitans GN=Sod2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.482e-16
Identity = 70/219 (31.96%), Postives = 87/219 (39.73%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNK-QIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            +  K  L   PY   AL P +SKD LE H GKHH+ YV+NLN  +   TE    K +  VV  S N      AFN      NH  +W                  IE  F S                GSGW WL Y                ++K K L ++   N   PL  V     L  IDVWEHAYYL  +N    Y+    D + +W+ +S R
Sbjct:   16 VRGKHTLPKLPYDYGALAPIISKDILEVHHGKHHQTYVNNLNAVEEQMTEAHSKKDVNKVVELSKNY-----AFNWGGHL-NHSIYW-QNLSPTKSEPSADLKKAIEEQFSSFEQFKKDLSALSIGVQGSGWGWLGY----------------NKKXKKLQILAVSNQ-EPLQAVTGLVPLFAIDVWEHAYYLQXKNXXAKYVEAXWD-IANWKBISDR 209          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_CAVPO (Superoxide dismutase [Mn], mitochondrial (Fragment) OS=Cavia porcellus GN=SOD2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.548e-16
Identity = 61/203 (30.05%), Postives = 83/203 (40.89%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYI 705
            +  K  L   PY   AL+PH++ + ++ H  KHH AY++NLN  I   +  +  +  DV      +  L PA   N     NH  FW                  I+RDFGS                GSGW WL +                  K++  L +   +  +PL        LL IDVWEHAYYL  +N RPDY+
Sbjct:   22 VRQKHSLPDLPYDYGALQPHINAEIMQLHHSKHHAAYLNNLN--IAEEKYQEALAKGDVTA----QVALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEKLTAVSVGVQGSGWGWLGF-----------------NKERGCLQIAACSNQDPLQGTTGLIPLLGIDVWEHAYYLQLKNVRPDYL 201          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_CHLTR (Superoxide dismutase [Mn] OS=Chlamydia trachomatis GN=sodA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.757e-16
Identity = 65/225 (28.89%), Postives = 99/225 (44.00%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLL---PAFN-NAAQAWNHDFFW---XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPL--VWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            + + + L   PY  +ALEP +S + ++ H  KHH+ Y++NLN+ +        KSL DV  A+ +   L+   PA   N     NH  FW                    LIE+ +GS                GSGW WL +               P +++   L+V+T    +PL        LL +DVWEHAYYL ++N R DY+  F   +++W+ +  R
Sbjct:    2 VFSSYMLPALPYDYDALEPVISAEIMQLHHQKHHQGYINNLNEAL--------KSL-DVANATQDLARLIAINPALRFNGGSHINHSLFWEMLAPQGKGGGVPPRHELLKLIEKFWGSFDNFLKNFITSSAAVQGSGWGWLAF--------------CPQKQE---LMVQTTANQDPLEATTGMIPLLGVDVWEHAYYLQYKNARMDYLKSF-PSIINWDYIENR 199          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_NICPL (Superoxide dismutase [Mn], mitochondrial OS=Nicotiana plumbaginifolia GN=SODA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.013e-15
Identity = 66/220 (30.00%), Postives = 92/220 (41.82%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSL---LTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            F L   PY   ALEP +S D ++ H   HH+ YV N NK +   +L D  S  D    +     +   FN      NH  FW                 L   I+ +FGS                GSGW WL                   +K+   LV++T    +PLV   ++L   L IDVWEHAYYL ++N RPDY+     K+++W+  ++  E
Sbjct:   28 FSLPDLPYDYGALEPAISGDIMQLHHQNHHQTYVTNYNKAL--EQLHDAISKGDAPTVAKLHSAI--KFNGGGHI-NHSIFWKNLAPVREGGGEPPKGSLGWAIDTNFGSLEALVQKMNAEGAALQGSGWVWLGV-----------------DKELKRLVIETTANQDPLVSKGANLVPLLGIDVWEHAYYLQYKNVRPDYLKNIW-KVMNWKYANEVYE 224          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM_HEVBR3.149e-1731.34Superoxide dismutase [Mn], mitochondrial OS=Hevea ... [more]
SODM2_CAEEL5.372e-1729.91Superoxide dismutase [Mn] 2, mitochondrial OS=Caen... [more]
SODF_BACSU9.163e-1728.84Probable superoxide dismutase [Fe] OS=Bacillus sub... [more]
SODM_PRUPE1.563e-1630.91Superoxide dismutase [Mn], mitochondrial OS=Prunus... [more]
SODM1_CAEEL2.666e-1630.51Superoxide dismutase [Mn] 1, mitochondrial OS=Caen... [more]
SODM_ONCVO3.482e-1630.09Superoxide dismutase [Mn], mitochondrial OS=Onchoc... [more]
SODM_GLOMM3.482e-1631.96Superoxide dismutase [Mn], mitochondrial OS=Glossi... [more]
SODM_CAVPO4.548e-1630.05Superoxide dismutase [Mn], mitochondrial (Fragment... [more]
SODM_CHLTR7.757e-1628.89Superoxide dismutase [Mn] OS=Chlamydia trachomatis... [more]
SODM_NICPL1.013e-1530.00Superoxide dismutase [Mn], mitochondrial OS=Nicoti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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