CN185645

Overview
NameCN185645
Unique NameCN185645
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_HALMA (Superoxide dismutase [Mn] OS=Haloarcula marismortui GN=sod PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.495e-14
Identity = 57/213 (26.76%), Postives = 83/213 (38.97%), Query Frame = 1
Query:  121 ELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            EL P PY  +ALEPH+S+  L +H   HH+ YV+ L  +     L + +   D   ++   G++    +N    + H  FW                  IE DFGS                  GWA LVY                    K L  V         +W    +L +DVWEH+YY D+   R D+I  F + +V W+  ++  E
Sbjct:    8 ELPPLPYDYDALEPHISEQVLTWHHDTHHQGYVNGL--ESAEETLAENRDAGDFGSSAAAMGNVT---HNGCGHYLHTLFWENMDPNGGGEPEGELLDRIEEDFGS--YEGWKGEFEAAASAAGGWALLVYDPVA----------------KQLRNVPVDKHDQGALWGSHPILALDVWEHSYYYDYGPARGDFIDAFFE-VVDWDKAAEEYE 196          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_DROME (Superoxide dismutase [Mn], mitochondrial OS=Drosophila melanogaster GN=Sod2 PE=2 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.495e-14
Identity = 64/221 (28.96%), Postives = 87/221 (39.37%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFN-NAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYS--SLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +  K  L   PY   ALEP + ++ +E H  KHH+ YV+NLN      +L + KS  D          L PA   N     NH  FW                  IE  + S                GSGW WL +                ++K   L +   PN  +PL        L  IDVWEHAYYL ++N RP Y+    D + +W+ +S R +
Sbjct:   15 VRGKHTLPKLPYDYAALEPIICREIMELHHQKHHQTYVNNLNA--AEEQLEEAKSKSDTTKLI----QLAPALRFNGGGHINHTIFWQNLSPNKTQPSDDLKKA-IESQWKSLEEFKKELTTLTVAVQGSGWGWLGF----------------NKKSGKLQLAALPNQ-DPLEASTGLIPLFGIDVWEHAYYLQYKNVRPSYVEAIWD-IANWDDISCRFQ 210          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODF_AERPE (Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix GN=sod PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.259e-14
Identity = 61/217 (28.11%), Postives = 90/217 (41.47%), Query Frame = 1
Query:  115 KFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW--XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            ++EL P PY  NALEP++ ++ ++ H  KHH  YV   N  +   E    K L+  +           +FN A     H  FW                   LIE+ FG              T  G GW  L +               P  ++  +L V+  N +  +      +L IDVWEHAYYL ++N R  Y+  + + +V+W+ V KRLE
Sbjct:    6 RYELPPLPYNYNALEPYIIEEIMKLHHQKHHNTYVKGANAALEKIE----KHLKGEIQIDVRAVMRDFSFNYAGHIM-HTIFWPNMAPPGKGGGTPGGRVADLIEKQFGGFEKFKALFSAAAKTVEGVGWGVLAFD--------------PLTEELRILQVEKHNVL--MTAGLVPILVIDVWEHAYYLQYKNDRGSYVENWWN-VVNWDDVEKRLE 200          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM2_HALVO (Superoxide dismutase [Mn] 2 OS=Halobacterium volcanii GN=sod2 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 57/214 (26.64%), Postives = 88/214 (41.12%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +EL P PY  +ALEPH+S+  L +H   HH+ YV+  N       L + +   +      + G +    +N +    HD FW                  I  DFGS                 +GWA LVY                S + ++++V K        +W    +L +DVWEH+YY D+   R D++S F + +V W+  + R E
Sbjct:    3 YELDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNAD--DETLAENREAGEF---GSSAGAVRNVTHNGSGHILHDLFWQNMSPEGGDEPEGLLAERIAEDFGSYEAWKGEFEAAAGA--AAGWALLVYDSF-------------SNQLRNVVVDKHDQGA---LWGSHPILALDVWEHSYYHDYGPARGDFVSAFFE-VVDWDEPAARYE 192          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM1_HALVO (Superoxide dismutase [Mn] 1 OS=Halobacterium volcanii GN=sod1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.257e-14
Identity = 57/214 (26.64%), Postives = 88/214 (41.12%), Query Frame = 1
Query:  118 FELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            +EL P PY  +ALEPH+S+  L +H   HH+ YV+  N       L + +   +      + G +    +N +    HD FW                  I  DFGS                 +GWA LVY                S + ++++V K        +W    +L +DVWEH+YY D+   R D++S F + +V W+  + R E
Sbjct:    4 YELDPLPYEYDALEPHISEQVLTWHHDTHHQGYVNGWNAD--DETLAENREAGEF---GSSAGAVRNVTHNGSGHILHDLFWQNMSPEGGDEPEGLLAERIAEDFGSYEAWKGEFEAAAGA--AAGWALLVYDSF-------------SNQLRNVVVDKHDQGA---LWGSHPILALDVWEHSYYHDYGPARGDFVSAFFE-VVDWDEPAARYE 193          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM3_MAIZE (Superoxide dismutase [Mn] 3.3, mitochondrial OS=Zea mays GN=SODA.2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14
Identity = 64/214 (29.91%), Postives = 88/214 (41.12%), Query Frame = 1
Query:  139 YPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPA--------FNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXL---IERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSL---LTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 738
            Y   ALEP +S + +  H  K+H  YV N NK +        + ++DVV+    KGD            FN      NH  FW                 L   I+ DFGS                GSGW WL                   +K+   + V+T    +PLV   +SL   L IDVWEHAYYL ++N RPDY++    K+++W+
Sbjct:   40 YDFGALEPVISGEIMRLHHQKNHATYVVNYNKAL--------EQIDDVVV----KGDDSAVVQLQGAIKFNGGGHV-NHSIFWKNLKPISEGGGEPPHGKLGWAIDEDFGSFEALVKRMNAEGAALQGSGWVWLAL-----------------DKEAKKVSVETTANQDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLNNIW-KVMNWK 222          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_NEUCR (Superoxide dismutase [Mn], mitochondrial OS=Neurospora crassa GN=sod-2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.261e-14
Identity = 60/228 (26.32%), Postives = 89/228 (39.04%), Query Frame = 1
Query:  112 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDL------LPAFN-NAAQAWNHDFFW-----XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLE 759
            A + L   PY  NALEP++S   +E H  KHH+ YV NLN  +             V +A+    D+       PA   N     NH  FW                       IE+ +GS                GSGW WLV +               S  +K  L + T    +P+V     +  +D+WEHAYYL + N +  Y+     K+++W++  +R +
Sbjct:   32 ATYSLPQLPYAYNALEPYISAQIMELHHSKHHQTYVTNLNNAL------------KVHVAAIASSDIPAQIAQQPAIKFNGGGHINHSLFWKNLAPAETPETNYSKAAPSLAAEIEKTWGSFDEFKKAFSAALLGIQGSGWGWLVKE---------------STAEKGRLRIITTKDQDPVVGGEVPVFGVDMWEHAYYLQYLNGKAAYVENIW-KVINWKTAEERFQ 231          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM2_HALSA (Superoxide dismutase [Mn] 2 OS=Halobacterium salinarium GN=sod2 PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 7.261e-14
Identity = 55/212 (25.94%), Postives = 83/212 (39.15%), Query Frame = 1
Query:  112 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVS 747
            ++ EL   PY  +ALEPH+S+  + +H   HH++YVD LN       L + +   D    +   GD+    +N    + H  FW                  I  DFGS                 SGWA LVY                    K L  V   N     +W    +L +DVWEH+YY D+   R  ++  F + ++ W+ ++
Sbjct:    2 SQHELPSLPYDYDALEPHISEQVVTWHHDTHHQSYVDGLNS--AEETLAENRETGDHASTAGALGDVT---HNGCGHYLHTMFWEHMSPDGGGEPSGALADRIAADFGSYENWRAEFEVAAGA--ASGWALLVYDPVA----------------KQLRNVAVDNHDEGALWGSHPILALDVWEHSYYYDYGPDRGSFVDAFFE-VIDWDPIA 189          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_PROFR (Superoxide dismutase [Mn/Fe] OS=Propionibacterium freudenreichii subsp. shermanii GN=sodA PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 63/216 (29.17%), Postives = 95/216 (43.98%), Query Frame = 1
Query:  112 AKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFW--XXXXXXXXXXXXXXXXXLIERDFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            A + L   PY  +ALEP++S + +E H  KHH+AYVD  N  +   +L + +   D    + NK +   AFN A    NH  FW                    I+  FGS                GSGWA LV+             PL     K +  ++  +  N L      LL +D+WEHA+YL ++N + DY+  + + +V+W+ V+ R
Sbjct:    1 AVYTLPELPYDYSALEPYISGEIMELHHDKHHKAYVDGANTAL--DKLAEARDKAD--FGAINKLEKDLAFNLAGHV-NHSVFWKNMAPKGSAPERPTDELGAAIDEFFGSFDNMKAQFTAAATGIQGSGWASLVW------------DPL----GKRINTLQFYDHQNNLPAGSIPLLQLDMWEHAFYLQYKNVKGDYVKSWWN-VVNWDDVALR 194          
BLAST of CN185645 vs. ExPASy Swiss-Prot
Match: SODM_SCHPO (Superoxide dismutase [Mn], mitochondrial OS=Schizosaccharomyces pombe GN=sod2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.617e-13
Identity = 60/222 (27.03%), Postives = 90/222 (40.54%), Query Frame = 1
Query:  106 ISAKFELKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGK-SLE-DVVIASYNKGDLLPAFNNAAQAWNHDFFWXXXXXXXXXXXXXXXXXLIER----DFGSXXXXXXXXXXXXXTQFGSGWAWLVYKXXXXXXXXXXXXPLPSEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKR 753
            +  K  L P PY  NALEP +S+  ++ H  KHH+ YV+NLN      +L D    LE +V + +  K      FN      NH  FW                  + +     +GS             +  GSGWAWL+                  +KD SL +  T N     +     ++ ID WEHAYY  ++NR+ +Y     + +++W+    R
Sbjct:   22 VHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNA--AQEKLADPNLDLEGEVALQAAIK------FNGGGHI-NHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDFQKEMNAALASIQGSGWAWLIV-----------------DKDGSLRITTTAN--QDTIVKSKPIIGIDAWEHAYYPQYENRKAEYFKAIWN-VINWKEAESR 214          
The following BLAST results are available for this feature:
BLAST of CN185645 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
SODM_HALMA2.495e-1426.76Superoxide dismutase [Mn] OS=Haloarcula marismortu... [more]
SODM_DROME2.495e-1428.96Superoxide dismutase [Mn], mitochondrial OS=Drosop... [more]
SODF_AERPE3.259e-1428.11Superoxide dismutase [Mn/Fe] OS=Aeropyrum pernix G... [more]
SODM2_HALVO4.257e-1426.64Superoxide dismutase [Mn] 2 OS=Halobacterium volca... [more]
SODM1_HALVO4.257e-1426.64Superoxide dismutase [Mn] 1 OS=Halobacterium volca... [more]
SODM3_MAIZE5.559e-1429.91Superoxide dismutase [Mn] 3.3, mitochondrial OS=Ze... [more]
SODM_NEUCR7.261e-1426.32Superoxide dismutase [Mn], mitochondrial OS=Neuros... [more]
SODM2_HALSA7.261e-1425.94Superoxide dismutase [Mn] 2 OS=Halobacterium salin... [more]
SODM_PROFR1.238e-1329.17Superoxide dismutase [Mn/Fe] OS=Propionibacterium ... [more]
SODM_SCHPO1.617e-1327.03Superoxide dismutase [Mn], mitochondrial OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0001K14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0001K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN185645 ID=CN185645; Name=CN185645; organism=Citrus sinensis; type=EST; length=763bp
GAGGATTTGGTTGACTGGCCAAGGTTAGGACTTGGTGCAAGGAGTACGCT
ATTGCCTTTTCATTGGAGAAACAAAAAGATGGAGCAGAGAAAGACTGGTG
GCCAAATTTCTGCGAAATTTGAGCTGAAGCCTCCACCTTATCCACTGAAT
GCTCTGGAGCCACATATGAGCAAGGACACCCTGGAATTCCACTGGGGAAA
GCACCACAGAGCTTATGTGGATAACCTCAACAAGCAAATTGTTGGAACTG
AGCTCGGTGATGGAAAGTCATTGGAAGATGTCGTTATTGCTTCTTACAAC
AAGGGTGACTTGCTTCCAGCTTTCAATAATGCTGCACAGGCGTGGAACCA
TGACTTCTTCTGGGAATCCATGAAACCTGGTGGTGGCGGAAAGCCGTCTG
GTGAACTTCTAGGACTGATTGAAAGGGATTTTGGTTCTTTTGAAAAATTT
CTTGAGGAATTCAAGGCGGCTGCAGCCACTCAGTTTGGTTCTGGTTGGGC
CTGGCTTGTATACAAAGCCAATAATAGAGCTGATGTGGCTAATGCGGTGA
ATCCTCTTCCATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCC
AATGCTGTCAATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGA
TGTATGGGAGCATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATT
ACATATCAGTTTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAA
AGACTGGAAACTG
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